View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_48 (Length: 308)
Name: NF0688_low_48
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 1548267 - 1548093
Alignment:
| Q |
74 |
aacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactggaaagtcaa |
173 |
Q |
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| T |
1548267 |
aacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaactggaaagtcaa |
1548168 |
T |
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| Q |
174 |
ttatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
248 |
Q |
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| T |
1548167 |
ttatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
1548093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 1544414 - 1544232
Alignment:
| Q |
74 |
aacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatctaaagaaagtttttaaac--------tgg |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||| |
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| T |
1544414 |
aacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcat-atcaatccaaagaaagtttttaaacaataaaattgg |
1544316 |
T |
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| Q |
166 |
aaagtcaa-ttatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
248 |
Q |
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| T |
1544315 |
aaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagcttatagagtata |
1544232 |
T |
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