View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_5 (Length: 520)
Name: NF0688_low_5
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 517
Target Start/End: Original strand, 3782350 - 3782838
Alignment:
| Q |
30 |
ctctgtgttcttaattatatatttttaaggacatattaaactaaatcatacaaaaggaaatgcttgtaaaaccttccacgatttgcaggaggtggttctt |
129 |
Q |
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| T |
3782350 |
ctctgtgttcttaattatatatttttaaggacatattaaactaaatcatacaaaaggaaatgcttgtaaaaccttccacgatttgcaggaggtggttctt |
3782449 |
T |
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| Q |
130 |
atannnnnnnn-cccgttattcttatatattataacctccatgaggttctcaacatttattaaatctattgagaaaatgattataaaaccatcaacgagt |
228 |
Q |
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| T |
3782450 |
atatttttttttcccgttattcttgtatattataacctccatgaggttctcaacatttattaaatctattgagaaaatgattataaaaccatcaacgagt |
3782549 |
T |
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| Q |
229 |
tgcaggaagttatatttaataaaaccaagaactccaatgtgatatacctagctggcattctccattgatctgaatcttttatatatataaatatggtgga |
328 |
Q |
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| T |
3782550 |
tgcaggaagttatatttaataaaaccaagaactccaatgtgatatacctagctggcattctccattgatctgaatcttttatatatataaatatggtgga |
3782649 |
T |
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| Q |
329 |
accagtcaccaacacattcaaagttgagtagtctttatccacttctcatttcagaacaacaattactaacaatactaacatttgtcgcgaaatagtgatg |
428 |
Q |
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| T |
3782650 |
accagtcaccaacacattccaagttgagtagtctttatccacttctcatttcagaacaacaattactaacaatactaacatttgtcgcgaaatagtgatg |
3782749 |
T |
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| Q |
429 |
gcgatgagggtgatagagaagagtgaagttgcacctccacctggtttagttccctctccaaccattcttcccctcatattcttcgacat |
517 |
Q |
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| T |
3782750 |
gcgatgagggtgatagagaagagtgaagttgcacctccacctggtttagttccctctccaaccattcttcccctcacattcttggacat |
3782838 |
T |
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