View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_54 (Length: 291)
Name: NF0688_low_54
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_54 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 41147100 - 41147285
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
41147100 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataaaatatacattgaagtaatagctcaccaagtcttttcttgt |
41147199 |
T |
|
| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
41147200 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacctattgcatccttaaatctct |
41147285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 41171989 - 41172166
Alignment:
| Q |
66 |
ctgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgtcttccttc |
165 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41171989 |
ctgtcaacagtcttcggggtcactcgattctgataacttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgtcttgtttc |
41172088 |
T |
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| Q |
166 |
gaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||| | || ||||||||||||||||| |
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| T |
41172089 |
gaaagtatctggaaggattgttccaaaaagacttgttttgggaggggaattttaacctcattgcatccttaaatctct |
41172166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 68 - 243
Target Start/End: Original strand, 41163874 - 41164049
Alignment:
| Q |
68 |
gtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgtcttccttcga |
167 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41163874 |
gtcaacagtcttcggattcactcgattccgatagcttcttagttgaataagatatacattgaagcaatagctcaccatgtcttttcttgtcttccttcga |
41163973 |
T |
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| Q |
168 |
aagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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||| || ||||||||||||||||||||||||||||||| || ||||||||||| | || |||||||||||||||| |
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| T |
41163974 |
aagtatatggatggattgttccaaaaagacttgttttgggaagggatttttaacctcatcgcatccttaaatctct |
41164049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 32631340 - 32631525
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
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|
|||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32631340 |
catcatcactgtcaacagtctccgaagtcactcgattctgataacttcttagttgaataagatatacattgaagtaataactcaccatgtcttttcttgt |
32631439 |
T |
|
| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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| || || ||||| | |||||||||||||||||||||||||||||||| ||||||||||||| || || | |||||||||||||| |
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| T |
32631440 |
cctcttttgaaagtaactggatggattgttccaaaaagacttgttttgggaggggatttttagactcattatatccttaaatctct |
32631525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 32657232 - 32657417
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
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|
|||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32657232 |
catcatcactgtcaacagtctccgaagtcactcgattctgataacttcttagttgaataagatatacattgaagtaataactcaccatgtcttttcttgt |
32657331 |
T |
|
| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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| || || ||||| | |||||||||||||||||||||||||||||||| ||||||||||||| || || | |||||||||||||| |
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| T |
32657332 |
cctcttttgaaagtaactggatggattgttccaaaaagacttgttttgggaggggatttttagactcattatatccttaaatctct |
32657417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 32582094 - 32582279
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
| |
|
|||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32582094 |
catcatcactgtaaacagtctccgaagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatatctcaccatgtcttttcttgt |
32582193 |
T |
|
| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
| |
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| || || ||||| | ||||| |||||||||||||||||||||||||| ||||||||||||| || || | |||||||||||||| |
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| T |
32582194 |
cctcttttgaaagtaactggacggattgttccaaaaagacttgttttgggaggggatttttagactcattatatccttaaatctct |
32582279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 32600227 - 32600412
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
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|
|||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32600227 |
catcatcactgtcaacagtctccgaagtcactcgattctgataacttcttagttgaataagatatacattgaagtaataactcaccatgtcttttcttgt |
32600326 |
T |
|
| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
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| || || ||||| | ||||||||||||||||||||||| |||||||| ||||||||||||| || || | |||||||||||||| |
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| T |
32600327 |
cctcttttgaaagtaactggatggattgttccaaaaagaattgttttgggaggggatttttagactcattatatccttaaatctct |
32600412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 26404715 - 26404898
Alignment:
| Q |
58 |
catcatcactgtcaacagcattcggagtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgt |
157 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26404715 |
catcgtcattgtcaacagtgttcggagtcactcgattttgatagattcttagttgaataagatatacattgaagtaatagctcacc--gtcttttcttgc |
26404812 |
T |
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| Q |
158 |
cttccttcgaaagcatctggatggattgttccaaaaagacttgttttgagaggggatttttaaacccaatgcatccttaaatctct |
243 |
Q |
| |
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|||||| |||||||||| |||||||| |||||| | |||||| |||||||||| |||||||| || ||||||||||||||||| |
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| T |
26404813 |
attcctttgaaagcatctagatggatttttccaatatgacttgctttgagagggaatttttaacttcattgcatccttaaatctct |
26404898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 21455 - 21591
Alignment:
| Q |
83 |
agtcactcgattctgatagcttcttagttgaataagatatacattgaagtaatagctcaccatgtcttttcttgtcttccttcgaaagcatctggatgga |
182 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | || || ||||| | || |||||| |
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| T |
21455 |
agtcacttgattctgatagcttcttagttgaataagatatacattgaagtaataactcagcatgtcttttcttgccctcttttgaaagtaacttgatgga |
21554 |
T |
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| Q |
183 |
ttgttccaaaaagacttgttttgagaggggattttta |
219 |
Q |
| |
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||||| |||||||| || ||||| ||||||||||||| |
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| T |
21555 |
ttgttgcaaaaagaattattttgggaggggattttta |
21591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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