View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0688_low_58 (Length: 280)
Name: NF0688_low_58
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_58 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 250395 - 250250
Alignment:
| Q |
90 |
agagagaga-aagacaaggtagaagaaaggaagtcaaaatacgacagacataaatattgactagactcacgtgttgcttctcttctactggccccaccac |
188 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
250395 |
agagagagagaagacaaggtagaagaaaggaagtcaaaatacgacagacataaacattgactagactcacgcgttgcttctcttctactggccccaccac |
250296 |
T |
|
| Q |
189 |
catatatatgctttacttcacattgggtctctctcttgtgatgatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250295 |
catatatatgctttacttcacattgggtctctctcttgtgatgatg |
250250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 250478 - 250419
Alignment:
| Q |
34 |
cacagacagataaatcaaactacacatattcattctttctttctgagttttaagaaagagag |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
250478 |
cacagacagataaatcaaactacacatattcattctttctttctgag--ttaagaaagagag |
250419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University