View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_59 (Length: 280)

Name: NF0688_low_59
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_59
NF0688_low_59
[»] chr4 (2 HSPs)
chr4 (82-152)||(25910127-25910197)
chr4 (152-183)||(25910226-25910257)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 25910127 - 25910197
Alignment:
Q  82 tatttaaatcttaataataatgacttctaaaacaaatcaggttgcagcatgctgaaaaatatatgatgtat 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25910127 tatttaaatcttaataataatgacttctaaaacaaatcaggttgcagcatgctgaaaaatatatggtgtat 25910197  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 25910226 - 25910257
Alignment:
Q  152 tataaaccatgtaccataagcaattgcttctt 183  Q
    ||||||||||||||||||||||||||||||||    
T  25910226 tataaaccatgtaccataagcaattgcttctt 25910257  T

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