View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0688_low_62 (Length: 277)
Name: NF0688_low_62
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_62 |
 | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 25801549 - 25801734
Alignment:
| Q |
55 |
atagttagtggagtacacatgattgattttaattggttgcaggtaactcaaccataattttctaaaagtaactcaagtctcacattgtttaaatactacg |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25801549 |
atagttagtggagtacacatgattgattttaattggttgcaggtaactcaaccataattttctaaaagtaactcaagtctcaccttgtttaaatactacg |
25801648 |
T |
|
| Q |
155 |
attcagtttacaatttgaatttaatggaaatacacaaatgatgtaaaatagtattataacctaatctaacaaaaattcatcatatt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25801649 |
attcagtttacaatttgaatttaatggaaatacacaaatgatgtaaaatagtattataacctaatctaacaaaaattcatcatatt |
25801734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 34833670 - 34833706
Alignment:
| Q |
57 |
agttagtggagtacacatgattgattttaattggttg |
93 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
34833670 |
agttagtggagtacacacgattgattttaattagttg |
34833706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 112966 - 112785
Alignment:
| Q |
58 |
gttagtggagtacacatgattgattttaattggttgcaggtaactcaaccataattttctaaaagtaactcaagtctcacattgtttaaatactacgatt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
112966 |
gttagtggagtacacatgattgattttaattggttgtaggtaactcacccacaactttctaaaagtaactcaagtcccactttgtttaaatactacgatt |
112867 |
T |
|
| Q |
158 |
cagtttacaatttgaatttaatggaaatacacaaatgatgtaaaatagtattataacctaatctaacaaaaattcatcatatt |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
112866 |
cagtttacaatttgaatttaat-gaaatacacaaatgatgtaaactagttttataacctaatctaacaagaattcatcatatt |
112785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University