View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_63 (Length: 277)

Name: NF0688_low_63
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_63
NF0688_low_63
[»] chr5 (20 HSPs)
chr5 (19-182)||(42061486-42061649)
chr5 (19-183)||(28442018-28442182)
chr5 (19-182)||(31862872-31863035)
chr5 (54-182)||(14376706-14376834)
chr5 (19-184)||(43490791-43490956)
chr5 (19-183)||(22937892-22938056)
chr5 (19-136)||(32837129-32837246)
chr5 (19-136)||(37214812-37214929)
chr5 (73-183)||(14016927-14017037)
chr5 (91-182)||(21336650-21336742)
chr5 (91-182)||(21827949-21828041)
chr5 (73-151)||(7624288-7624366)
chr5 (73-182)||(17747617-17747726)
chr5 (90-182)||(28788309-28788401)
chr5 (91-180)||(39191333-39191422)
chr5 (19-67)||(39191446-39191494)
chr5 (34-147)||(2837527-2837641)
chr5 (19-70)||(21336558-21336609)
chr5 (91-185)||(40916795-40916892)
chr5 (118-182)||(7270241-7270305)
[»] chr4 (41 HSPs)
chr4 (19-182)||(5721808-5721971)
chr4 (25-183)||(33410805-33410963)
chr4 (19-182)||(19865480-19865643)
chr4 (25-183)||(5669627-5669785)
chr4 (19-183)||(3798633-3798797)
chr4 (19-182)||(15431164-15431327)
chr4 (19-182)||(15437778-15437941)
chr4 (19-182)||(18910604-18910767)
chr4 (19-182)||(9716951-9717114)
chr4 (19-186)||(12237350-12237517)
chr4 (19-181)||(19861124-19861286)
chr4 (54-182)||(37104113-37104241)
chr4 (29-136)||(49269781-49269888)
chr4 (19-145)||(53093758-53093884)
chr4 (74-183)||(56198028-56198137)
chr4 (33-132)||(40617663-40617762)
chr4 (73-182)||(56194722-56194831)
chr4 (73-182)||(47114776-47114885)
chr4 (33-136)||(5680515-5680618)
chr4 (77-182)||(15405793-15405898)
chr4 (64-136)||(14571072-14571144)
chr4 (182-237)||(3909922-3909977)
chr4 (73-182)||(33926121-33926230)
chr4 (73-182)||(29323979-29324088)
chr4 (73-182)||(44809795-44809904)
chr4 (91-182)||(12782106-12782197)
chr4 (91-183)||(3718335-3718427)
chr4 (91-183)||(15430674-15430767)
chr4 (91-183)||(15437288-15437381)
chr4 (91-183)||(27013228-27013321)
chr4 (106-182)||(44164001-44164078)
chr4 (91-174)||(21418987-21419070)
chr4 (76-177)||(34320738-34320839)
chr4 (91-145)||(37741471-37741525)
chr4 (106-183)||(52007355-52007432)
chr4 (106-182)||(27677889-27677966)
chr4 (73-141)||(15812973-15813041)
chr4 (91-174)||(40794200-40794283)
chr4 (91-182)||(27691933-27692025)
chr4 (106-182)||(53010382-53010458)
chr4 (113-182)||(19819950-19820020)
[»] chr3 (30 HSPs)
chr3 (19-182)||(18645578-18645741)
chr3 (19-182)||(538015-538178)
chr3 (19-182)||(52198305-52198468)
chr3 (21-183)||(10884017-10884179)
chr3 (19-183)||(23299390-23299554)
chr3 (57-182)||(10107489-10107614)
chr3 (19-182)||(6921890-6922053)
chr3 (78-182)||(17532565-17532669)
chr3 (19-185)||(16185493-16185659)
chr3 (19-136)||(35411723-35411840)
chr3 (91-182)||(53814971-53815062)
chr3 (25-159)||(22994435-22994569)
chr3 (32-182)||(29344622-29344773)
chr3 (54-98)||(55032789-55032833)
chr3 (72-183)||(3839789-3839903)
chr3 (73-136)||(19302255-19302318)
chr3 (113-182)||(54460367-54460436)
chr3 (113-181)||(9380012-9380080)
chr3 (106-182)||(20729400-20729477)
chr3 (91-182)||(16243166-16243257)
chr3 (80-136)||(19305445-19305501)
chr3 (19-70)||(9380143-9380194)
chr3 (92-131)||(17529546-17529585)
chr3 (92-183)||(34984668-34984759)
chr3 (113-174)||(54736781-54736842)
chr3 (19-67)||(6445498-6445547)
chr3 (106-182)||(10880776-10880852)
chr3 (19-67)||(28265115-28265164)
chr3 (106-182)||(41976321-41976397)
chr3 (113-145)||(11636146-11636178)
[»] chr8 (19 HSPs)
chr8 (24-182)||(18722151-18722310)
chr8 (33-183)||(33878089-33878239)
chr8 (19-183)||(25592336-25592501)
chr8 (19-178)||(25595521-25595681)
chr8 (25-185)||(10663008-10663168)
chr8 (19-182)||(43682634-43682798)
chr8 (19-136)||(45156755-45156872)
chr8 (19-136)||(5540832-5540949)
chr8 (19-136)||(14420910-14421027)
chr8 (19-136)||(25228060-25228175)
chr8 (100-182)||(23612569-23612651)
chr8 (73-182)||(14589707-14589816)
chr8 (73-183)||(22174782-22174892)
chr8 (73-182)||(18826725-18826834)
chr8 (72-145)||(38249248-38249321)
chr8 (119-182)||(19792926-19792990)
chr8 (106-182)||(30640505-30640583)
chr8 (19-67)||(17895354-17895403)
chr8 (72-145)||(37681629-37681701)
[»] chr7 (17 HSPs)
chr7 (19-182)||(10431386-10431549)
chr7 (19-182)||(26556510-26556673)
chr7 (19-183)||(4542073-4542237)
chr7 (19-182)||(2442114-2442277)
chr7 (19-182)||(8276012-8276175)
chr7 (73-182)||(16164889-16164998)
chr7 (73-182)||(48644616-48644725)
chr7 (73-182)||(6602621-6602730)
chr7 (91-183)||(45288047-45288139)
chr7 (113-182)||(48645852-48645921)
chr7 (91-182)||(45291383-45291474)
chr7 (84-182)||(17729973-17730071)
chr7 (72-182)||(20081530-20081640)
chr7 (33-182)||(9865493-9865642)
chr7 (91-136)||(9080422-9080467)
chr7 (32-147)||(9273885-9274000)
chr7 (153-185)||(13450736-13450768)
[»] chr6 (16 HSPs)
chr6 (19-178)||(23388989-23389149)
chr6 (19-183)||(23379650-23379815)
chr6 (19-183)||(5739026-5739191)
chr6 (19-184)||(34501414-34501577)
chr6 (19-136)||(9953082-9953199)
chr6 (46-181)||(2371414-2371549)
chr6 (73-182)||(31071494-31071603)
chr6 (73-148)||(13004433-13004509)
chr6 (75-145)||(6512433-6512503)
chr6 (106-182)||(28666100-28666176)
chr6 (73-141)||(28112641-28112709)
chr6 (84-145)||(12991556-12991617)
chr6 (91-182)||(10289186-10289277)
chr6 (72-144)||(14282373-14282445)
chr6 (33-65)||(13004611-13004643)
chr6 (113-145)||(13022212-13022244)
[»] chr2 (23 HSPs)
chr2 (19-183)||(26358671-26358835)
chr2 (19-182)||(36809272-36809435)
chr2 (19-182)||(38006123-38006286)
chr2 (19-182)||(25821754-25821922)
chr2 (19-183)||(25873202-25873366)
chr2 (19-182)||(25869835-25869998)
chr2 (19-182)||(30275528-30275691)
chr2 (54-182)||(15466170-15466298)
chr2 (19-136)||(25139877-25139994)
chr2 (54-182)||(29439597-29439723)
chr2 (20-185)||(16788386-16788550)
chr2 (73-179)||(36985626-36985732)
chr2 (73-183)||(45456299-45456409)
chr2 (73-182)||(45453051-45453160)
chr2 (73-182)||(38014636-38014745)
chr2 (91-182)||(10599951-10600042)
chr2 (73-182)||(31430529-31430638)
chr2 (107-182)||(5665830-5665905)
chr2 (73-137)||(31428340-31428404)
chr2 (91-183)||(3874481-3874573)
chr2 (106-182)||(5104953-5105027)
chr2 (91-180)||(13136764-13136853)
chr2 (106-182)||(43722904-43722980)
[»] scaffold0035 (1 HSPs)
scaffold0035 (19-182)||(61597-61760)
[»] chr1 (13 HSPs)
chr1 (19-183)||(2793298-2793462)
chr1 (27-182)||(49499413-49499568)
chr1 (19-182)||(1951182-1951345)
chr1 (19-186)||(29644145-29644312)
chr1 (19-142)||(34733100-34733223)
chr1 (73-182)||(31204014-31204123)
chr1 (73-182)||(6071791-6071895)
chr1 (84-182)||(41059135-41059234)
chr1 (73-182)||(45961598-45961707)
chr1 (73-181)||(27537104-27537212)
chr1 (106-183)||(2404721-2404798)
chr1 (106-183)||(21019292-21019368)
chr1 (91-182)||(42021721-42021812)
[»] scaffold0005 (2 HSPs)
scaffold0005 (21-171)||(290974-291124)
scaffold0005 (64-136)||(246232-246304)
[»] scaffold0334 (1 HSPs)
scaffold0334 (58-182)||(18463-18588)
[»] scaffold0080 (1 HSPs)
scaffold0080 (19-96)||(26331-26408)
[»] scaffold0045 (1 HSPs)
scaffold0045 (76-182)||(88965-89071)
[»] scaffold1684 (1 HSPs)
scaffold1684 (77-182)||(369-474)
[»] scaffold0015 (1 HSPs)
scaffold0015 (19-182)||(197242-197394)
[»] scaffold0757 (1 HSPs)
scaffold0757 (91-182)||(4563-4654)
[»] scaffold0381 (1 HSPs)
scaffold0381 (91-183)||(6462-6555)
[»] scaffold0270 (3 HSPs)
scaffold0270 (91-183)||(969-1061)
scaffold0270 (91-182)||(4329-4420)
scaffold0270 (91-182)||(11459-11550)
[»] scaffold0520 (1 HSPs)
scaffold0520 (92-183)||(4790-4881)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 42061649 - 42061486
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42061649 tcatcatgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagc 42061550  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42061549 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 42061486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 28442018 - 28442182
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
T  28442018 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttttctttgctgtttaaac 28442117  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28442118 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 28442182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 31863035 - 31862872
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||    
T  31863035 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaattttctatttttcttgctttctttgttgtttaagc 31862936  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  31862935 ttgcttgtgaactcaaaatattatgaaaatgacactaaaaataaggaatgactgactgtcatca 31862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 14376706 - 14376834
Alignment:
Q  54 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 153  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  14376706 aatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgatttctttgttgtttaaacttgcttgtgaactcaaaatatcatgaaaatgacac 14376805  T
Q  154 taaaaacagtgaatgactgactgtcatca 182  Q
    |||||| ||||||||||||||||||||||    
T  14376806 taaaaatagtgaatgactgactgtcatca 14376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 43490956 - 43490791
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||    
T  43490956 tcatcctgtgctcctaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagc 43490857  T
Q  119 ttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtg-aatgactgactgtcatcacc 184  Q
    ||| |||||||||| |||||||||| |||| ||| |||||||  ||| |||||| |||||||||||||    
T  43490856 ttgtttgtgaactcaaaaatatcat-aaaaagactctaaaaa-tgtgaaatgacagactgtcatcacc 43490791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 22937892 - 22938056
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| |||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||    
T  22937892 tcatcttgtgctccaaatcgtgatacgttttcaacaaccgtggcacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagc 22937991  T
Q  119 ttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||||||||| |||||||||| |||| ||| ||||||||   ||||||| ||||||||||||    
T  22937992 ttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaacgtggaatgacagactgtcatcac 22938056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 32837246 - 32837129
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||  |||||| ||||||    
T  32837246 tcatcctatgctccaaatcgtgacacgttttcaacaatcatgacacgattttgctttcttcaaaatcttctatttttctttcttttcttgctgcttaagc 32837147  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  32837146 ttgcttgtgaactcaaaa 32837129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 37214929 - 37214812
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||    
T  37214929 tcatcctgtgctccaaatcgtgacatgttttcaacaattgtgatacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagc 37214830  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  37214829 ttgcttgtgaactcaaaa 37214812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 14016927 - 14017037
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  14016927 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 14017025  T
Q  172 gactgtcatcac 183  Q
    ||||||||||||    
T  14017026 gactgtcatcac 14017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 21336650 - 21336742
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  ||| || |||||||||||||||||||||||| ||| || |||| ||| ||||||| ||||||||||||||||||||||    
T  21336650 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 21827949 - 21828041
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| ||||||||||||| |||||||||| |||||| |||| ||| ||||||| || |||||||||||||||||||    
T  21827949 tttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 7624366 - 7624288
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgac 151  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||| ||||||||||||| ||||| ||||||||    
T  7624366 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcctgtgaactcaaaacatcattaaaatgac 7624288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 17747726 - 17747617
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||| ||| ||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  17747726 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagctttcttatgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 17747628  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  17747627 gactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 28788309 - 28788401
Alignment:
Q  90 atttttcttgttttctttgctggttaagcttgcttgtgaact-caaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||  |||||| |||||||||||||||||||  |||||||||| |||| ||| ||||||| ||  ||||||||||||||||||    
T  28788309 atttttcttgtttttcttgctgcttaagcttgcttgtgaactaaaaaatatcat-aaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 39191422 - 39191333
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcat 180  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||| |||| ||| ||||||| |   ||||| ||||||||||    
T  39191422 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaagtatcat-aaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 39191494 - 39191446
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgat 67  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||    
T  39191494 tcatcctgtactttaaattgtgacacgttttcaacaatcgtgacacgat 39191446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 2837527 - 2837641
Alignment:
Q  34 aatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact- 131  Q
    ||||||||||| |||||||  |||||||||| ||||   |||||||||   |||||  ||||||||| |||  |||||| |||||||||||||||||||     
T  2837527 aatcgtgacacgtttttcagtaatcgtgacatgattcc-ctttcttcagtttcttcagtttttcttgcttttattgctgcttaagcttgcttgtgaactc 2837625  T
Q  132 caaaatatcatgaaaa 147  Q
    ||||||||||| ||||    
T  2837626 caaaatatcataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 21336558 - 21336609
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgatttt 70  Q
    ||||||||||||  |||||||||||  |||||||||| ||||||||||||||    
T  21336558 tcatcctgtgctctaaatcgtgacatgttttcaacaaccgtgacacgatttt 21336609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 40916795 - 40916892
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaat--gacactaaaaacagtgaatgactgactgtcatcacct 185  Q
    ||||||||| |||  ||| || |||||||||||||||||||||||| ||| || ||||   ||| ||||||| ||  |||||||||||||||||||||    
T  40916795 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatgataaaaaaaagactctaaaaatagcaaatgactgactgtcatcacct 40916892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 7270305 - 7270241
Alignment:
Q  118 cttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||| || ||||||| |||||||||||    
T  7270305 cttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 5721808 - 5721971
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5721808 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagc 5721907  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||| |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5721908 ttgtttgtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 5721971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 33410805 - 33410963
Alignment:
Q  25 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 124  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  33410805 tgtgcttcaaatcgtaacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 33410904  T
Q  125 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33410905 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 33410963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 19865480 - 19865643
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| |||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||    
T  19865480 tcatcctgtgctccaaatcgtgatacattttcaataatcgtgacacgattttgttttcttcaaaatcttctatttttcttgctttctttgttgtttaagc 19865579  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19865580 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 19865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 5669785 - 5669627
Alignment:
Q  25 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 124  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  5669785 tgtgtttcaaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 5669686  T
Q  125 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5669685 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 5669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 3798633 - 3798797
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| || | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |    
T  3798633 tcatcctttgttccaaatcgtgacacattttcaacaatcgtgacaagattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttaaac 3798732  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3798733 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 3798797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 15431327 - 15431164
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |    
T  15431327 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaac 15431228  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  15431227 ttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 15437941 - 15437778
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |    
T  15437941 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaac 15437842  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  15437841 ttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 18910767 - 18910604
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||     
T  18910767 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagt 18910668  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18910667 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 18910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 9717114 - 9716951
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||||||||  |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |    
T  9717114 tcatcctgtgctctaaattgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttttctttgttgtttaaac 9717015  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9717014 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgaccgactgtcatca 9716951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 12237517 - 12237350
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||  || |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||    
T  12237517 tcatcctgtattttaaattgtgacacattttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgctttctttgttgtttaagc 12237418  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacctc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12237417 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgaatgactatcatcacctc 12237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 19861124 - 19861286
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| |||||||||| || ||||||||||||||||||| ||||||  |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  19861124 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacaattttgtgttcttcaaaatcttatatttttcttgctttctttgctgtttaagc 19861223  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19861224 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgtctgccatc 19861286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 37104113 - 37104241
Alignment:
Q  54 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  37104113 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgcttgtgaactcaaaatatcatgaaaatgatac 37104212  T
Q  154 taaaaacagtgaatgactgactgtcatca 182  Q
    |||| ||||||||||||||| ||||||||    
T  37104213 taaacacagtgaatgactgagtgtcatca 37104241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 49269888 - 49269781
Alignment:
Q  29 cttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtga 128  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||  |    
T  49269888 cttcaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgctttctttgccgtttaagcttgtttgcta 49269789  T
Q  129 actcaaaa 136  Q
    ||||||||    
T  49269788 actcaaaa 49269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 53093884 - 53093758
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||| |||||| ||||||    
T  53093884 tcatcctgtgctccaattcgtgacacgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgctttccttgctgtttaagc 53093785  T
Q  119 ttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||||||| | ||||||    
T  53093784 ttgcttgtgaactcaaaagaccatgaa 53093758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 56198137 - 56198028
Alignment:
Q  74 ttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactga 173  Q
    ||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||    
T  56198137 ttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactga 56198038  T
Q  174 ctgtcatcac 183  Q
    ||||||||||    
T  56198037 ctgtcatcac 56198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 40617663 - 40617762
Alignment:
Q  33 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 132  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  40617663 aaatcgtgacacgttttcaacaatcgtggcacgattttgccttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactc 40617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 56194831 - 56194722
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    |||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  |||||| ||    
T  56194831 tttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgattg 56194732  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  56194731 actgtcatca 56194722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 47114885 - 47114776
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| ||||||| ||  || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  47114885 tttcttcaaaatcttgtatttttcatgttttccttattgtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactg 47114786  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  47114785 actgtcatca 47114776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 5680618 - 5680515
Alignment:
Q  33 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 132  Q
    |||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  ||| || |||||||||||| |||||||    
T  5680618 aaattgtgacacgttttcaacaatcgtgacatgattttgcttttttcaaaatcttctatttttcttgcttttcttgttgtttaagcttgcttatgaactc 5680519  T
Q  133 aaaa 136  Q
    ||||    
T  5680518 aaaa 5680515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 15405793 - 15405898
Alignment:
Q  77 ttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactg 176  Q
    ||||||||||| |||||||| ||  ||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||     
T  15405793 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactt 15405892  T
Q  177 tcatca 182  Q
    ||||||    
T  15405893 tcatca 15405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 14571144 - 14571072
Alignment:
Q  64 cgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 136  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||    
T  14571144 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaa 14571072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 3909977 - 3909922
Alignment:
Q  182 acctctcgttactgtatctctcaaaaatgagctgaaacacttgaatagtcctttgc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3909977 acctctcgttactgtatctctcaaaaatgagctgaaacacttgaatagtcctttgc 3909922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 33926230 - 33926121
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||| | |||||| ||||||||||||||  |   ||||||||    
T  33926230 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaagacatcatgcaaatgacactaaaagtaacaaatgactg 33926131  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  33926130 actgtcatca 33926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 29324088 - 29323979
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  29324088 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 29323990  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  29323989 gactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 44809795 - 44809904
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  44809795 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 44809893  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  44809894 gactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 12782197 - 12782106
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||||||||||||| ||||||||| |||||| |||||||| ||||||| || |||||||||||||||||||    
T  12782197 tttttcttgcttttcttgctgcttaagcttgcttgtaaactcaaaaatatcat-aaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 3718427 - 3718335
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  ||| || |||||||||||||||||||| |||||||||| ||||| || ||||||| ||||||||| |||||||||||||    
T  3718427 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaaaat-actctaaaaatagtgaatgagtgactgtcatcac 3718335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 15430674 - 15430767
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| || |||| |  ||||||||||||||||||||    
T  15430674 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15430767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 15437288 - 15437381
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| || |||| |  ||||||||||||||||||||    
T  15437288 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatcac 15437381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 27013321 - 27013228
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  ||| || |||||||||| ||||||||||||| |||||| |||| ||| ||||||| || ||||||||||||||||||||    
T  27013321 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 27013228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 44164078 - 44164001
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||||||||||||||||||| |||||| |||| |||  |||||| ||||||||||||||||||||||    
T  44164078 ttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 21419070 - 21418987
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgac 174  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| || |||||||||||    
T  21419070 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagcgaatgactgac 21418987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 34320738 - 34320839
Alignment:
Q  76 cttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgac 174  Q
    |||||||||||| |||||||| || |||| ||  || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  ||||||||||    
T  34320738 cttcaaaatcttgtatttttcatgctttccttattgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgac 34320836  T
Q  175 tgt 177  Q
    |||    
T  34320837 tgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 37741471 - 37741525
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  37741471 tttttcttgtttttcttgctgtttaagcttgcttgtgaactccaaatatcatgaa 37741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 52007355 - 52007432
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaa-aatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||| |||||||||||| ||||||||| |||||||| |||| ||| ||||||| || ||||||||||||||||||||    
T  52007355 ttgctgcttaagcttgcttttgaactcaacaatatcataaaaa-gactctaaaaatagcgaatgactgactgtcatcac 52007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 27677889 - 27677966
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| |||| |||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||||||||||||    
T  27677889 ttgctgcttaatcttgattgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 15812973 - 15813041
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatca 141  Q
    ||||||||||||||| |||||||| || |||| ||| || |||| ||||||||||||||||||| ||||    
T  15812973 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaacatca 15813041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 40794283 - 40794200
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgac 174  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||||||    
T  40794283 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 27691933 - 27692025
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||| |||||||||||| || |||||||| | |||| ||| ||||||| ||||||||||| | ||||||||    
T  27691933 tttttcttgcttttcttgctgcttaatcttgcttgtgaattcaaaaatatcgtaaaaaagactctaaaaatagtgaatgactaattgtcatca 27692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 53010382 - 53010458
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||| ||||||||||| |||||||||| |||| ||| ||||||| | ||||||||||||| ||||||    
T  53010382 ttgctgcttaatcttacttgtgaactcaaaaatatcat-aaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 19820020 - 19819950
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaa--tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||| |||||||||||||||||||  |||||| |||| |||  |||||| || |||||||||||||||||||    
T  19820020 ttaatcttgcttgtgaactcaaaaaatatcataaaaa-gactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 18645578 - 18645741
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18645578 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagc 18645677  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||| |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18645678 ttgtttgtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 18645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 538178 - 538015
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  538178 tcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaaac 538079  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  538078 ttgtttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 52198468 - 52198305
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| ||||||  |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  52198468 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagc 52198369  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  52198368 ttgcttgtgaactcaaaatatcatgaaaatgacactaaacatagtgaatgactgactgtcatca 52198305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 10884179 - 10884017
Alignment:
Q  21 atcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagctt 120  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||| |||    
T  10884179 atcctgtgcttcaaatcgtgacaggttttcaacaatcgtgacacgattttgctttcttcgaaatcttctattttttttgttttcattgctgtttaaactt 10884080  T
Q  121 gcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  10884079 gcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 10884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 23299390 - 23299554
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |    
T  23299390 tcatcttgtgctccaaattgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaac 23299489  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  23299490 ttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 23299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 10107489 - 10107614
Alignment:
Q  57 cgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  10107489 cgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 10107588  T
Q  157 aaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||    
T  10107589 aaacagtgaatgactgactgtcatca 10107614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 6922053 - 6921890
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |    
T  6922053 tcatcatgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttatatttctcttgttttctttgctgtttaaac 6921954  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||    
T  6921953 ttgcttgtgaactcaaaatatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 17532565 - 17532669
Alignment:
Q  78 tcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgt 177  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17532565 tcaaaatcttctttttttcttgttttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgt 17532664  T
Q  178 catca 182  Q
     ||||    
T  17532665 aatca 17532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 16185493 - 16185659
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||||||||  ||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||| ||||||    
T  16185493 tcatcctgtgctctaaaacgtgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttatatttttcttgcttttcttgctgcttaagc 16185592  T
Q  119 ttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacct 185  Q
    ||| |||||||||| |||||||||| |||| ||| |||||||    ||||||| ||||||||||||||    
T  16185593 ttgtttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatcacct 16185659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 35411840 - 35411723
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttctt-gttttctttgctggttaag 117  Q
    |||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  35411840 tcatcctgtgttccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttctttgttttctt-gctgcttaag 35411742  T
Q  118 cttgcttgtgaactcaaaa 136  Q
     ||||||||||||||||||    
T  35411741 tttgcttgtgaactcaaaa 35411723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 53815062 - 53814971
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  53815062 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 22994435 - 22994569
Alignment:
Q  25 tgtgcttcaaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgct 123  Q
    |||||| ||||||||||||| ||||||||||| |||| ||| ||||  |||||  || |||||||  ||||||||| |||| |||||| |||||||||||    
T  22994435 tgtgctccaaatcgtgacacgtttttcaacaaccgtgtcactatttcactttcaccacaatcttcagtttttcttgctttccttgctgtttaagcttgct 22994534  T
Q  124 tgtgaactcaaaatatcatgaaaatgacactaaaaa 159  Q
    |||| |||||||||||||| || || ||||||||||    
T  22994535 tgtggactcaaaatatcat-aatattacactaaaaa 22994569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 29344622 - 29344773
Alignment:
Q  32 caaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaac 130  Q
    ||||||||| ||| |||||||| ||||||||||||||    |||| ||||   ||||| |||||||||| |||  |||||| |||| |||||||||||||    
T  29344622 caaatcgtgtcacgtttttcaataatcgtgacacgatccc-cttttttcagtttcttcaatttttcttgcttttcttgctgcttaatcttgcttgtgaac 29344720  T
Q  131 tcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||||| | || ||| ||||||| ||||||||||||||||||||||    
T  29344721 tcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 55032789 - 55032833
Alignment:
Q  54 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032789 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 55032833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 3839903 - 3839789
Alignment:
Q  72 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcat--gaaaatgacactaaaaacagtgaatg 168  Q
    ||||||||||  |||||  ||||||||| |||  |||||| |||||||||||||||||||| ||||||||||   ||||  || ||||||| ||||||||    
T  3839903 ctttcttcaatttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatg 3839804  T
Q  169 actgactgtcatcac 183  Q
    |||||||||||||||    
T  3839803 actgactgtcatcac 3839789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 19302255 - 19302318
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||    
T  19302255 tttcttcaaaatcttctatttttctcgctttccttgttgtttaagcttgcttgtgaactcaaaa 19302318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 54460436 - 54460367
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||| |||||||||||||||||| |||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  54460436 ttaagattgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 9380080 - 9380012
Alignment:
Q  113 ttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatc 181  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||| || ||||||||||||||||||    
T  9380080 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 20729400 - 20729477
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| ||||||||||||||||||| |||| |||||| ||||  || ||||||| || |||||||||||||||||||    
T  20729400 ttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 16243257 - 16243166
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||||| ||||||||    
T  16243257 tttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 19305445 - 19305501
Alignment:
Q  80 aaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 136  Q
    |||| ||||||||||||| | |||| |||||| ||||||||||||||||||||||||    
T  19305445 aaaaacttctatttttctcgctttccttgctgtttaagcttgcttgtgaactcaaaa 19305501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9380194 - 9380143
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgatttt 70  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||||||    
T  9380194 tcatcctgtgctctaaatcgtgacacgttttcaacaaccgtgacacgatttt 9380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 17529585 - 17529546
Alignment:
Q  92 ttttcttgttttctttgctggttaagcttgcttgtgaact 131  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  17529585 ttttcttgttttctttgctgtttaagcttgcttgtgaact 17529546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 34984668 - 34984759
Alignment:
Q  92 ttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||| |||  ||| || |||| ||||||||||||||| |||||||||| |||| ||| ||||||| |  ||||||||||||||||||||    
T  34984668 ttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatcac 34984759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 54736781 - 54736842
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgac 174  Q
    |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||||||||| ||||    
T  54736781 ttaagcttgcttgtgaactcaaaagtatcat-aaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 6445498 - 6445547
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacac-tttttcaacaatcgtgacacgat 67  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  6445498 tcatcatgtgcttcaaatcgtgacacgtttttcagtaatcgtgacacgat 6445547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 10880852 - 10880776
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||||||||||||    
T  10880852 ttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcaaataactgactgtcatca 10880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 28265164 - 28265115
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacac-tttttcaacaatcgtgacacgat 67  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  28265164 tcatcatgtgcttcaaatcgtgacacatttttcagtaatcgtgacacgat 28265115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 41976397 - 41976321
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||||||||||||||| ||||||| || ||||  || ||||||| || |||||||||||||||||||    
T  41976397 ttgctgtttaatcttgcttgtgaactcaaaaatattat-aaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 11636178 - 11636146
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||||||||| ||||||||||||    
T  11636178 ttaagcttgcttgtgaactctaaatatcatgaa 11636146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 18722151 - 18722310
Alignment:
Q  24 ctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgc 122  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  18722151 ctgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgc 18722250  T
Q  123 ttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18722251 atgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 18722310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 33878089 - 33878239
Alignment:
Q  33 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 132  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  33878089 aaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaaactttcttgtgaactc 33878188  T
Q  133 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33878189 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 33878239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 25592336 - 25592501
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaag 117  Q
    ||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  25592336 tcatcatgtgctccaaatcgggacacattttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaag 25592435  T
Q  118 cttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25592436 cttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcgtcac 25592501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 25595521 - 25595681
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaag 117  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  25595521 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaag 25595620  T
Q  118 cttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 178  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25595621 cttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacaatgaatgactgactgtc 25595681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 10663168 - 10663008
Alignment:
Q  25 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 124  Q
    |||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||    
T  10663168 tgtgctccaaatcatgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttagacttgctt 10663069  T
Q  125 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacct 185  Q
    |||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  10663068 gtgaactcaacatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcacct 10663008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 43682634 - 43682798
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||| | ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |    
T  43682634 tcatcctgtgttccaaattgtgacacgttttcaataatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttaaac 43682733  T
Q  119 ttgcttgtgaactcaaaatatcatg-aaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||    
T  43682734 ttgcttatgaactcaaaatatcatgaaaaatgatactaaaaatagtgaatgactgactgccatca 43682798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 45156755 - 45156872
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| | ||||    
T  45156755 tcatcctgtgctccaaatcgtgacacattttcaacaatcgtgacacgattgtgctttcttcaaaatcttctatttttcttgcttttcttgctgctaaagc 45156854  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  45156855 ttgcttgtgaactcaaaa 45156872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 5540832 - 5540949
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||   |||||| ||| ||    
T  5540832 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacatgattttgcttccttcaaaatcttctatttttcttacttgtcttgctgcttatgc 5540931  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  5540932 ttgcttgtgaactcaaaa 5540949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 14421027 - 14420910
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||  ||| || ||||||    
T  14421027 tcatcctgtgttccaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttatatttttcttgcttttcttgttgcttaagc 14420928  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||| ||||    
T  14420927 ttgcttgtgaactaaaaa 14420910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 25228175 - 25228060
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| ||||||||||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||  |||||  || |||    
T  25228175 tcatcatgtgctccaaatcgtgacacgttttcagcaatcgagacacgatttt--tttcttcaaaatcttctatttttcttgtttttcttgcttcttgagc 25228078  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  25228077 ttgcttgtgaactcaaaa 25228060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 23612651 - 23612569
Alignment:
Q  100 ttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  23612651 ttttctttgctgtttaaacttgcttgtgaactcaaaatctcatcaaaatgacactaaaaatagtgaatgactgactgtcatca 23612569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 14589707 - 14589816
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| ||  ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||     
T  14589707 tttcttcaaaatcttgtatttttcatgctttccttgttgtgtaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataatgaatgacta 14589806  T
Q  173 actgtcatca 182  Q
    ||| ||||||    
T  14589807 actatcatca 14589816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 22174782 - 22174892
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||| |||| ||||||||||||||||| |||| | |||||| ||    
T  22174782 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaaacatcatgaaaatgacact-aaaataatgaatggct 22174880  T
Q  172 gactgtcatcac 183  Q
    ||||||||||||    
T  22174881 gactgtcatcac 22174892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 18826725 - 18826834
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || ||||| |||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  18826725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagtttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 18826823  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  18826824 gactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 38249248 - 38249321
Alignment:
Q  72 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    ||||||||||||||||  | ||||| ||||||| |||||| ||||||||||||||||| |||||| ||||||||    
T  38249248 ctttcttcaaaatctttaacttttcatgttttccttgctgtttaagcttgcttgtgaattcaaaagatcatgaa 38249321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 19792990 - 19792926
Alignment:
Q  119 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| |||||||| | |||||||||||    
T  19792990 ttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatca 19792926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 30640583 - 30640505
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcat-gaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||||||||||||||||||||||| ||||||  |||| ||  || |||| ||||||||| ||||||||||||    
T  30640583 ttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatca 30640505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17895354 - 17895403
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacac-tttttcaacaatcgtgacacgat 67  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||    
T  17895354 tcatcatgtgcttcaaatcgtgacacgtttttcagtaatcgtgacacgat 17895403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 37681629 - 37681701
Alignment:
Q  72 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    ||||||||||||||||| | ||||| | ||||| |||||  |||||||| | ||||||||||||| ||||||||    
T  37681629 ctttcttcaaaatcttcaacttttcatattttccttgctctttaagcttac-tgtgaactcaaaagatcatgaa 37681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 10431549 - 10431386
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
T  10431549 tcatcctgtgctctaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttttctttgctgtttaaac 10431450  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10431449 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 26556673 - 26556510
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||    
T  26556673 tcatcatgtgctctaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagc 26556574  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26556573 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 4542237 - 4542073
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| |||| |||||| |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| |    
T  4542237 tcatcctatgctccaaatcatgacacattttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgctgtttaaac 4542138  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4542137 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 4542073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 2442114 - 2442277
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||| |    
T  2442114 tcatcctatgcttcaaatcgtgatacgttttcaacaatcgtgacacgaatttgctttcctcagaatcttctatttttcttgttttctttgctgtttaaac 2442213  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  2442214 ttgcttgtgaactcaaaatatcatgaaaatgacacttaaaatagtgaatgactgactgtcatca 2442277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 8276175 - 8276012
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||  |||||| || |||    
T  8276175 tcatcatgtgctccaaatcgtgatacgttttcaacaatcatgacacgattttgttttcttcaaaatcttctatttttcttgcttttcttgctgcttgagc 8276076  T
Q  119 ttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||| |||||||||| |||| ||| ||||||| |  ||||||| |||||||||||    
T  8276075 ttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 16164998 - 16164889
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| ||||||||||| |||||||||| |  |||||||||    
T  16164998 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaattacactaaaaataacgaatgactg 16164899  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  16164898 actgtcatca 16164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 48644725 - 48644616
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  48644725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacattatgaaaatgacactaaaaataaagaatgactg 48644626  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  48644625 actgtcatca 48644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 6602730 - 6602621
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| |  |||| ||| || ||||||||||||||||||| |||| || ||||| ||||||||||||| |  |||||||||    
T  6602730 tttcttcaaaatcttgtatttttcatactttccttgttgtttaagcttgcttgtgaacttaaaacattatgaacatgacactaaaaataacgaatgactg 6602631  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  6602630 actgtcatca 6602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 45288047 - 45288139
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  45288047 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatcac 45288139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 48645852 - 48645921
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||    
T  48645852 ttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactgtcatca 48645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 45291383 - 45291474
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  45291383 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 17730071 - 17729973
Alignment:
Q  84 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||| |||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| |||||| |||||||||||||||    
T  17730071 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 20081530 - 20081640
Alignment:
Q  72 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgac 170  Q
    ||||||||||  ||||  |||||||||| |||  |||||| |||||||||||||||||||| |||||||||| ||||  || ||||||| ||||||||||    
T  20081530 ctttcttcaatttctttgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaacactctaaaaatagtgaatgac 20081628  T
Q  171 tgactgtcatca 182  Q
    ||||||||||||    
T  20081629 tgactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 9865493 - 9865642
Alignment:
Q  33 aaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 131  Q
    |||||||| ||| |||||||| ||||||||||||||  | |||| ||||   |||||  ||||||||| |||  |||||| |||| ||||||||||||||    
T  9865493 aaatcgtgtcacgtttttcaataatcgtgacacgatcct-cttttttcattttcttcagtttttcttgcttttcttgctgcttaatcttgcttgtgaact 9865591  T
Q  132 c-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    | |||||||||| |||| ||| ||||||| || |||||||||||||||||||    
T  9865592 caaaaatatcat-aaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9080467 - 9080422
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 136  Q
    ||||||||| |||  |||||| ||||||||||||||||||||||||    
T  9080467 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 9080422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 9273885 - 9274000
Alignment:
Q  32 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 131  Q
    ||||||||||||| ||||||  |||||||||| ||||   |||||||||   ||||| | |||||||  |||  ||| || |||||||||||||||||||    
T  9273885 caaatcgtgacacgttttcagtaatcgtgacatgattcc-ctttcttcagtttcttcaacttttctttcttttcttggtgcttaagcttgcttgtgaact 9273983  T
Q  132 -caaaatatcatgaaaa 147  Q
     ||||||||||| ||||    
T  9273984 ccaaaatatcataaaaa 9274000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 13450736 - 13450768
Alignment:
Q  153 ctaaaaacagtgaatgactgactgtcatcacct 185  Q
    ||||||| |||||||||||||||||||||||||    
T  13450736 ctaaaaatagtgaatgactgactgtcatcacct 13450768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 23388989 - 23389149
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaag 117  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  23388989 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgttttctttgctgtttaag 23389088  T
Q  118 cttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 178  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23389089 cttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 23379650 - 23379815
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaag 117  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  23379650 tcatcatgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaag 23379749  T
Q  118 cttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23379750 cttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcgtcac 23379815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 5739026 - 5739191
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| |||| ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |    
T  5739026 tcatcctttgctccaaatcgtgacatgtttttaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttagac 5739125  T
Q  119 ttgcttgtgaactcaaaatatcatg-aaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||||||||||| |||||||| ||||  || ||||||| |||||||||||||||||||||||    
T  5739126 ttgcttgtgaactcaacatatcatgaaaaaaaactctaaaaatagtgaatgactgactgtcatcac 5739191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 34501577 - 34501414
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| |    
T  34501577 tcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcatcaaaatcttctttttttcttgttttctttgctgtttaaac 34501478  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacc 184  Q
    ||||||||||||||  || ||||||||||||||| |||||  |  ||||||| |||||||||||||    
T  34501477 ttgcttgtgaactc--aacatcatgaaaatgacattaaaattaacgaatgacggactgtcatcacc 34501414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 9953199 - 9953082
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||||| ||||||    
T  9953199 tcattctgtgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagc 9953100  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    ||||||||||||||||||    
T  9953099 ttgcttgtgaactcaaaa 9953082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 2371549 - 2371414
Alignment:
Q  46 ttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| ||    
T  2371549 ttttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgttttatttgctgtttaaacttgcttatgaactcaaaatatcataaa 2371450  T
Q  146 aatgacactaaaaacagtgaatgactgactgtcatc 181  Q
    ||  ||| |||||| ||||||| ||| ||| |||||    
T  2371449 aaaaacattaaaaatagtgaataactaactatcatc 2371414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 31071603 - 31071494
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || ||||||||||| |||||||||||| |||||||||||||||||||||| |  |||||||||    
T  31071603 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgctcgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactg 31071504  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  31071503 actgtcatca 31071494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 13004509 - 13004433
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaat 148  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||||    
T  13004509 tttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaat 13004433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 6512503 - 6512433
Alignment:
Q  75 tcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||| | ||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  6512503 tcttcaaaatcttcaacttttcatgttttccttgctgtttaagcttgcttgtgaactcaaaagatcatgaa 6512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 28666100 - 28666176
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| |  |||||||||||||||||||    
T  28666100 ttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 28112641 - 28112709
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatca 141  Q
    |||||||||||||||| | ||||| || |||| |||||  |||||||||||||||||||||||| ||||    
T  28112641 tttcttcaaaatcttcaacttttcatgctttccttgctttttaagcttgcttgtgaactcaaaagatca 28112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 12991556 - 12991617
Alignment:
Q  84 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    ||||| |||||||||| |||  ||| || |||||||||||||||||||| ||||||||||||    
T  12991556 tcttcaatttttcttgcttttcttgttgattaagcttgcttgtgaactccaaatatcatgaa 12991617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 10289277 - 10289186
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  ||| || |||| ||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||| ||||||||||    
T  10289277 tttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 14282373 - 14282445
Alignment:
Q  72 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatga 144  Q
    ||||||||||||| ||| | ||||| ||||||| |||||| || |||||||| || ||||||||| |||||||    
T  14282373 ctttcttcaaaattttcaacttttcatgttttccttgctgttttagcttgctcgtaaactcaaaagatcatga 14282445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 13004611 - 13004643
Alignment:
Q  33 aaatcgtgacactttttcaacaatcgtgacacg 65  Q
    |||||||||||| ||||||||||||||||||||    
T  13004611 aaatcgtgacacgttttcaacaatcgtgacacg 13004643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 13022212 - 13022244
Alignment:
Q  113 ttaagcttgcttgtgaactcaaaatatcatgaa 145  Q
    |||||||||||||||||||| ||||||||||||    
T  13022212 ttaagcttgcttgtgaactccaaatatcatgaa 13022244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26358835 - 26358671
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |    
T  26358835 tcatcctgtgctccaaatcgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgtcttctttgctgtttaaac 26358736  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26358735 ttccttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 26358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 36809272 - 36809435
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| || |||| |    
T  36809272 tcatcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaac 36809371  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36809372 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 36809435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 38006123 - 38006286
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||    
T  38006123 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtcacacgattttgctttcttcaaaatcttctatttctcttgctttctttgttgtttaagc 38006222  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38006223 ttgtttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtaatca 38006286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 25821754 - 25821922
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaag 117  Q
    |||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  25821754 tcatcctgtgttccaaatcgtgacaccttttcaacaatcttgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaag 25821853  T
Q  118 cttgcttgtgaactcaaa----atatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25821854 cttgcttgtgaactcaaaatatatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 25821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 25873366 - 25873202
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |    
T  25873366 tcatcctgtgctccaaatcatgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttttctttgttgtttaaac 25873267  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  25873266 ttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 25873202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 25869998 - 25869835
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |    
T  25869998 tcatcctgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttttctttgttgtttaaac 25869899  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    || |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25869898 tttcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 30275528 - 30275691
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||  ||| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |    
T  30275528 tcatcctacgctccaaatcgtgacacgttttcaacaatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaac 30275627  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  30275628 ttgtttgtgaattcaaaatatcatgaaaatgacactaaaaatattgaatgactgactatcatca 30275691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 15466298 - 15466170
Alignment:
Q  54 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 153  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  15466298 aatcgtgacacgattttgctttcttcaaaatcttctatttctcttgatttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 15466199  T
Q  154 taaaaacagtgaatgactgactgtcatca 182  Q
    |||||| ||||||||||||| ||||||||    
T  15466198 taaaaatagtgaatgactgattgtcatca 15466170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 25139877 - 25139994
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||    
T  25139877 tcatcttgtgctccaaatcgtgacacgttgtcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgctttctttgccgtttaagc 25139976  T
Q  119 ttgcttgtgaactcaaaa 136  Q
    || |||||||||||||||    
T  25139977 ttacttgtgaactcaaaa 25139994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 29439723 - 29439597
Alignment:
Q  54 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 153  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||  || ||||||||||||||||    
T  29439723 aatcgtgacacgattttgctttcttcgaaatcttctttttttcttgttttctttgctgtttaaacttgcttgtgaactc--aacatcatgaaaatgacac 29439626  T
Q  154 taaaaacagtgaatgactgactgtcatca 182  Q
    |||||  |  ||||||| |||||||||||    
T  29439625 taaaattaacgaatgacggactgtcatca 29439597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 16788550 - 16788386
Alignment:
Q  20 catcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagct 119  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||  ||| || |||||||    
T  16788550 catcctgcgctctaaatcgtgacacgttttcaacaatcgtgacacgattgtgctttcatcaaaatcttatatttttcttgcttttcttgttgcttaagct 16788451  T
Q  120 tgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacct 185  Q
    ||||||||||||||||| ||||||  ||| ||  ||||||| ||  |||||||||||||||||||||    
T  16788450 tgcttgtgaactcaaaattatcat--aaaagattctaaaaatagcaaatgactgactgtcatcacct 16788386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 36985626 - 36985732
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    |||||||||||||||||||||||  || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||    
T  36985626 tttcttcaaaatcttctattttttctgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactg 36985725  T
Q  173 actgtca 179  Q
    |||||||    
T  36985726 actgtca 36985732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 45456409 - 45456299
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||| |||    
T  45456409 tttcttcaaaatcttgtatttttcatgctttctttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatggctg 45456310  T
Q  173 actgtcatcac 183  Q
    | |||||||||    
T  45456309 attgtcatcac 45456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 45453160 - 45453051
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||| ||||||| |  |||||||||    
T  45453160 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgaccctaaaaataaagaatgactg 45453061  T
Q  173 actgtcatca 182  Q
    | ||||||||    
T  45453060 attgtcatca 45453051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 38014745 - 38014636
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  38014745 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 38014647  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  38014646 gactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 10600042 - 10599951
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||  ||||||| ||||||||||||||||||||||    
T  10600042 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 31430529 - 31430638
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  31430529 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 31430627  T
Q  172 gactgtcatca 182  Q
     ||||||||||    
T  31430628 aactgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 5665905 - 5665830
Alignment:
Q  107 tgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| || |||||| ||||||||||||    
T  5665905 tgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 31428340 - 31428404
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaat 137  Q
    ||||||||||||||| |||||||| || |||| ||| || |||| ||||||||||||||||||||    
T  31428340 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaat 31428404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 3874573 - 3874481
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  |||||| |||| |||| |||||||||||||| |||| | |||| ||| ||||||| | |||||||||||||||||||||    
T  3874573 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcctaaaaa-gactctaaaaataatgaatgactgactgtcatcac 3874481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 5105027 - 5104953
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||||||||||||||| |||||||||| ||||  || ||||||  ||||||||||||||||||||||    
T  5105027 ttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaaaactctaaaa--agtgaatgactgactgtcatca 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 13136853 - 13136764
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcat 180  Q
    ||||||||| |||  |||||| |||| |||| |||||||||| |||||||||| |||||||| ||||||| |   ||||||||||||||||    
T  13136853 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcat-aaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 43722980 - 43722904
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| |  |||||| ||||||||||||    
T  43722980 ttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgattgactgtcatca 43722904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 61760 - 61597
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||    
T  61760 tcatcttgtgtttcaaatcgtgacacgttttcgacaatcgtgacacgattttgctttctttaaaatcttctatttctcttgatttctttgttgtttaagc 61661  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61660 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 61597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 2793462 - 2793298
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |    
T  2793462 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttttctttactgtttaaac 2793363  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||||||||||||||||||| |||| ||| ||||||| |||||| ||||||||||||||||    
T  2793362 ttgcttgtgaactcaaaatatcattaaaaagactctaaaaatagtgaacgactgactgtcatcac 2793298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 49499413 - 49499568
Alignment:
Q  27 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 126  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||    
T  49499413 tgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaagcttgcatgt 49499512  T
Q  127 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  49499513 gaactcaaaatatcatgaaaataacactaaaaacagcgaatgactgactgtcatca 49499568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 1951182 - 1951345
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| |    
T  1951182 tcatcctatgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttctttgaaatcttctatttttcttgttttctttgctgtttaaac 1951281  T
Q  119 ttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  1951282 ttgcttgtgaactcaagatatcatgaaaatgatacttaaaatagtgaatgactgactgtcatca 1951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 29644145 - 29644312
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| |||||     
T  29644145 tcatcctgtgctccaaatcgtgatacgttttcaacaatcgtgacacgattttactttcttcaaagtcttctatttttcttgctttttttgctgcttaagt 29644244  T
Q  119 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcacctc 186  Q
    |||||||||||||||||| |||||| |||| ||| ||| |||    ||||||| |||||||||||||||    
T  29644245 ttgcttgtgaactcaaaaatatcataaaaa-gactctataaatgtggaatgacagactgtcatcacctc 29644312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 34733100 - 34733223
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||| |||||| |||||  ||||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||| || ||| |||| |    
T  34733100 tcatcctgtgctccaaatcctgacatgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgatttccttactgtttaatc 34733199  T
Q  119 ttgcttgtgaactcaaaatatcat 142  Q
    |||||||||||||||||| |||||    
T  34733200 ttgcttgtgaactcaaaagatcat 34733223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 31204123 - 31204014
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  31204123 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactg 31204024  T
Q  173 actgtcatca 182  Q
    ||| ||||||    
T  31204023 actatcatca 31204014  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 6071791 - 6071895
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 172  Q
    ||||||||||||||| |||||||| ||||||  ||| || |||||||||||||||||||||||| | ||||||||||||     ||| | ||||||||||    
T  6071791 tttcttcaaaatcttgtatttttcatgtttttcttgttgtttaagcttgcttgtgaactcaaaacaacatgaaaatgac-----aaataatgaatgactg 6071885  T
Q  173 actgtcatca 182  Q
    ||||||||||    
T  6071886 actgtcatca 6071895  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 41059135 - 41059234
Alignment:
Q  84 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||| |||||||||| |||  |||||| ||||||||||||| |||||||||| |||||| |||| ||| ||||||| || |||||||||||||||||||    
T  41059135 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 45961598 - 45961707
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| || | ||| ||||||| ||  |||||||    
T  45961598 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aacaagactctaaaaatagcaaatgact 45961696  T
Q  172 gactgtcatca 182  Q
    |||||||||||    
T  45961697 gactgtcatca 45961707  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 27537104 - 27537212
Alignment:
Q  73 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| |||  |||||| ||  |||||||    
T  27537104 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactataaaaatagcaaatgact 27537202  T
Q  172 gactgtcatc 181  Q
    ||||||||||    
T  27537203 gactgtcatc 27537212  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 2404798 - 2404721
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||| |||| ||||||||||||||||||| ||| || |||| ||| ||||||| || ||||||||||||||||||||    
T  2404798 ttgctgcttaatcttgcttgtgaactcaaaaatattataaaaa-gactctaaaaatagcgaatgactgactgtcatcac 2404721  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 21019292 - 21019368
Alignment:
Q  106 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||| ||||||||| ||| |||||||||| |||||| |||  ||| ||||||| || ||||||||||||||||||||    
T  21019292 ttgctgcttaagcttggttgcgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatcac 21019368  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 42021812 - 42021721
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactca-aaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||| ||||||||||||||||  ||||| || |||| ||| ||||||| || |||||| ||||||||||||    
T  42021812 tttttcttgcttttattgctgcttaaacttgcttgtgaactcagtaatattat-aaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

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Target: scaffold0005 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 291124 - 290974
Alignment:
Q  21 atcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagctt 120  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| || |||| |||    
T  291124 atcctgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaactt 291025  T
Q  121 gcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgact 171  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  291024 gcttgtgaacttaaaatatcatgaaaatgacactaaaaatagtgaatgact 290974  T

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Target: scaffold0005; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 246232 - 246304
Alignment:
Q  64 cgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 136  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||    
T  246232 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaa 246304  T

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Target: scaffold0334 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 18588 - 18463
Alignment:
Q  58 gtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 156  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  18588 gtgacacgtttttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaa 18489  T
Q  157 aaacagtgaatgactgactgtcatca 182  Q
    ||||||||||||||||||||||||||    
T  18488 aaacagtgaatgactgactgtcatca 18463  T

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Target: scaffold0080 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 26408 - 26331
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttc 96  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26408 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttc 26331  T

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Target: scaffold0045 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 89071 - 88965
Alignment:
Q  76 cttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgact 175  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||    
T  89071 cttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactgact 88972  T
Q  176 gtcatca 182  Q
    |||||||    
T  88971 gtcatca 88965  T

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Target: scaffold1684 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 369 - 474
Alignment:
Q  77 ttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactg 176  Q
    ||||||||||| |||||||| ||  ||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||     
T  369 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactt 468  T
Q  177 tcatca 182  Q
    ||||||    
T  469 tcatca 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 197394 - 197242
Alignment:
Q  19 tcatcctgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagc 118  Q
    |||||||||||||||||||||||||| |||||||||||           ||| |||||||||||||||||||||||||||| |||  |||||| ||| ||    
T  197394 tcatcctgtgcttcaaatcgtgacacgttttcaacaat-----------tttactttcttcaaaatcttctatttttcttgcttttcttgctgcttatgc 197306  T
Q  119 ttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    |||||||||||||| |||||||||| |||| ||| |||||||    ||||||| |||||||||||    
T  197305 ttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 197242  T

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Target: scaffold0757 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 4654 - 4563
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  4654 tttttcttgattttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

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Target: scaffold0381 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 6462 - 6555
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  ||| || |||||||||| ||||||||||||| |||||| |||| ||| ||||||| || ||||||||||||||||||||    
T  6462 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 6555  T

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Target: scaffold0270 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 969 - 1061
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| ||||| || ||||||  || ||||||||||||||||||||    
T  969 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaat-actctaaaagtagcgaatgactgactgtcatcac 1061  T

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Target: scaffold0270; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 4329 - 4420
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||  || ||||||||||||| |||||    
T  4329 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaagtagcgaatgactgactgacatca 4420  T

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Target: scaffold0270; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 11459 - 11550
Alignment:
Q  91 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 182  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||  || ||||||||||||| |||||    
T  11459 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaagtagcgaatgactgactgacatca 11550  T

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Target: scaffold0520 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 4790 - 4881
Alignment:
Q  92 ttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 183  Q
    |||||||  ||| ||||||| |||| |||| |||||||||| |||||||||| |||| ||| ||||||| |  ||||||||||||||||||||    
T  4790 ttttctttctttttttgctgcttaatcttgtttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatcac 4881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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