View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_65 (Length: 276)

Name: NF0688_low_65
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_65
NF0688_low_65
[»] chr1 (1 HSPs)
chr1 (16-276)||(1717397-1717657)
[»] chr3 (17 HSPs)
chr3 (78-262)||(19812477-19812661)
chr3 (10-276)||(19849176-19849442)
chr3 (126-276)||(20036385-20036535)
chr3 (78-262)||(19818754-19818938)
chr3 (134-276)||(19956270-19956412)
chr3 (126-262)||(26653349-26653485)
chr3 (158-262)||(30914843-30914947)
chr3 (10-262)||(20015873-20016119)
chr3 (126-273)||(19838582-19838729)
chr3 (126-276)||(26647187-26647337)
chr3 (78-241)||(19989743-19989900)
chr3 (78-276)||(19951307-19951499)
chr3 (134-198)||(19832133-19832197)
chr3 (16-188)||(19858343-19858509)
chr3 (78-183)||(17114992-17115091)
chr3 (141-189)||(19943987-19944035)
chr3 (141-189)||(24839774-24839822)
[»] chr5 (2 HSPs)
chr5 (10-262)||(9815234-9815480)
chr5 (141-276)||(26354724-26354859)
[»] chr8 (2 HSPs)
chr8 (141-198)||(22689473-22689530)
chr8 (232-276)||(22651781-22651825)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 1717657 - 1717397
Alignment:
Q  16 atcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717657 atcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatc 1717558  T
Q  116 atggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctat 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717557 gtggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctat 1717458  T
Q  216 cgccaccaacaggatattttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  1717457 cgccaccaacaggatattttgacaaaccaactattgttttcttaaacaaagttaaatcctt 1717397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 19812661 - 19812477
Alignment:
Q  78 gccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaacct-tcccaacacccaaatttgaaccaagt 176  Q
    ||||||||||| |||||||||| || |||||| ||| ||| |||| | |||||| ||| ||| |||||||||| |||||| |||||||||||||||||||    
T  19812661 gccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaaatttttgaacctctcccaa-acccaaatttgaaccaagt 19812563  T
Q  177 aaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaac 262  Q
    ||||||||||||||||| ||| ||||   | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  19812562 aaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaac 19812477  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 19849442 - 19849176
Alignment:
Q  10 aagaatatcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttg 109  Q
    ||||| |||||| ||||| |||||||||| |||||||||||  |||||||||||| | | |  | || |||| |||||| | ||||| || || ||||||    
T  19849442 aagaaaatcatccatagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttg 19849343  T
Q  110 gtcatcatggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaa 209  Q
    |||| |||||||| | | |||| ||| ||| ||||||||||  || ||||||||||||||||||| ||||||||||||| |||| ||| ||||   | ||    
T  19849342 gtcaacatggtttgtggctgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaa 19849243  T
Q  210 atctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    ||||||| ||||||||| || ||||||||||| ||   |||||||||||||||  ||||||||||||    
T  19849242 atctatcaccaccaacatgacattttgacaaatcagtgattgttttcttaaacaaagttaaatcctt 19849176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 20036385 - 20036535
Alignment:
Q  126 gttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaac 225  Q
    |||||| ||||||| ||||||||||  || ||||||||||||||||||||||||||||||||| |||| |||| ||   || || |||||| ||||||||    
T  20036385 gttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatcaccaccaac 20036484  T
Q  226 aggatattttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    | || ||||||||||| |||| |||||||||||||||  ||||||||||||    
T  20036485 atgacattttgacaaatcaacaattgttttcttaaacaaagttaaatcctt 20036535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 19818938 - 19818754
Alignment:
Q  78 gccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagta 177  Q
    ||||||||||| ||||||||||||| |||||  ||| |||||||| | |  ||| ||| | | ||||||||||  || ||||||| ||||||||||| ||    
T  19818938 gccacctaaacaaaaaagggtctccatggtttatcaacatggtttgtggcagtggttgcatatttttgaacctctcccacacccatatttgaaccaaata 19818839  T
Q  178 aaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaac 262  Q
    |||||||||||||||| |||  ||   || ||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||    
T  19818838 aaagggtgattgaagagtaagttctaaaggaaatctatcaccaccaacagaatattttgacaaatcaactatttttttcttaaac 19818754  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 134 - 276
Target Start/End: Complemental strand, 19956412 - 19956270
Alignment:
Q  134 tgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatatt 233  Q
    |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||  ||   || | ||||||| ||||| ||||||||||    
T  19956412 tgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctatcaccacccacaggatatt 19956313  T
Q  234 ttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    |||||||| ||||| || ||||||| |||  ||||||||||||    
T  19956312 ttgacaaatcaactgtttttttctttaacaaagttaaatcctt 19956270  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 26653485 - 26653349
Alignment:
Q  126 gttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaac 225  Q
    |||||| ||| ||| || |||||||  || |||||||||||||||||||||||||||||||| | ||| |||| |||  || ||||||||| ||||||||    
T  26653485 gttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaac 26653386  T
Q  226 aggatattttgacaaaccaactattgttttcttaaac 262  Q
    |  |||||||||||||||||| |||||||||||||||    
T  26653385 ataatattttgacaaaccaacaattgttttcttaaac 26653349  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 30914947 - 30914843
Alignment:
Q  158 acccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttct 257  Q
    ||||||||||| ||||||| ||||||||| |||||| |||||||| ||| | ||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  30914947 acccaaatttgtaccaagtcaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgatattttgacaaaccaactattgttttct 30914848  T
Q  258 taaac 262  Q
    |||||    
T  30914847 taaac 30914843  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 20015873 - 20016119
Alignment:
Q  10 aagaatatcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttg 109  Q
    ||||| ||||||||||||||||||||||| || | ||||||  |||||||||||  | | |  | || ||||||||||| | ||||||||| | || |||    
T  20015873 aagaaaatcatcaatagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattg 20015972  T
Q  110 gtcatcatggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaa 209  Q
     ||| |||||      |||||| ||||||| ||||||||||  || ||||||||||||||||||| |||| ||||||||||||  |||| ||   || |     
T  20015973 atcaacatgg------gttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggat 20016066  T
Q  210 atctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaac 262  Q
    | ||||| ||||| ||| |||||||||||||| |||| |||||||||||||||    
T  20016067 acctatcaccacccacatgatattttgacaaatcaacaattgttttcttaaac 20016119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 19838729 - 19838582
Alignment:
Q  126 gttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaac 225  Q
    |||||| ||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||| |||| ||   || | || |||| | ||||||    
T  19838729 gttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtatcacaaccaac 19838630  T
Q  226 aggatattttgacaaaccaactattgttttcttaaacccagttaaatc 273  Q
    ||||| |||||||||| ||||| || ||||||| |||  |||||||||    
T  19838629 aggatgttttgacaaatcaactgtttttttctttaacaaagttaaatc 19838582  T

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Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 26647337 - 26647187
Alignment:
Q  126 gttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaac 225  Q
    |||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||  || | ||||||| |||||| |    
T  26647337 gttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttccaaaggatatctatcaccaccatc 26647238  T
Q  226 aggatattttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    || |  ||||  |||| |||| | |||||||||||||  | ||||||||||    
T  26647237 agaaatttttttcaaatcaacaagtgttttcttaaacaaacttaaatcctt 26647187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 19989900 - 19989743
Alignment:
Q  78 gccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaacct-tcccaacacccaaatttgaaccaagt 176  Q
    ||||||||||| ||||||||||| | | |||| ||| |||||      |||||| ||||||| |||||||||| |||||| ||||||| |||||||||||    
T  19989900 gccacctaaacaaaaaagggtcttcatagttgatcagcatgg------gttgtggttgtaaatttttgaacctctcccaa-acccaaacttgaaccaagt 19989808  T
Q  177 aaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaa 241  Q
    ||||||||||||||||| || ||||| | | || |||||| ||||||||||||  ||||||||||    
T  19989807 aaaagggtgattgaagaatagcctccatgggaagtctatcaccaccaacaggaagttttgacaaa 19989743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 19951499 - 19951307
Alignment:
Q  78 gccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaacct-tcccaacacccaaatttgaaccaagt 176  Q
    ||||||||||| ||||||||||||| |||||  ||  |||||      |||||| ||||||| |||| ||||| |||||| | |||||||||||||||||    
T  19951499 gccacctaaacaaaaaagggtctccatggtttatcggcatgg------gttgtggttgtaaatttttaaacctctcccaa-atccaaatttgaaccaagt 19951407  T
Q  177 aaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    ||||||||||||||||| |||  ||   || | ||||||| ||||| ||| |||||||||||||| |||| |||| ||| ||||||  ||||||||||||    
T  19951406 aaaagggtgattgaagagtaagttctaaaggatatctatcaccacccacatgatattttgacaaatcaacaattgcttttttaaacaaagttaaatcctt 19951307  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 19832197 - 19832133
Alignment:
Q  134 tgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaac 198  Q
    |||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||    
T  19832197 tgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaac 19832133  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 19858509 - 19858343
Alignment:
Q  16 atcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttggtcatc 115  Q
    |||||||||||| |||||||||| |||| ||||||  |||| ||||||| | |||  | || ||||||||||| | ||||| ||||| || ||| ||| |    
T  19858509 atcatcaatagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaac 19858410  T
Q  116 atggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgatt 188  Q
    ||||      ||||||  | |||| ||||||||||| || | ||||||| ||||| |||||||||||||||||    
T  19858409 atgg------gttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaagggtgatt 19858343  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 17115091 - 17114992
Alignment:
Q  78 gccacctaaaccaaaaagggtctccgtggttggtcatcatggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagta 177  Q
    ||||||||||| | ||||||||||| |||||| ||| ||||| ||      ||| ||||||| ||||||||||  || ||| ||||||||||||||||||    
T  17115091 gccacctaaacaataaagggtctccatggttgatcaacatggatt------gtggttgtaaatttttgaacctctcccacatccaaatttgaaccaagta 17114998  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 19944035 - 19943987
Alignment:
Q  141 ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattg 189  Q
    ||||||||||| || | ||||||| |||||||| |||||||||||||||    
T  19944035 ttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg 19943987  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 24839774 - 24839822
Alignment:
Q  141 ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattg 189  Q
    ||||||||||| || | ||||||| |||||||| |||||||||||||||    
T  24839774 ttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg 24839822  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 9815480 - 9815234
Alignment:
Q  10 aagaatatcatcaatagctgagtctaatgtcaacctaacatcttcaattttcaagtctttactcatacgccacctaaaccaaaaagggtctccgtggttg 109  Q
    ||||| |||||| ||||| |||||||||| || | ||||||  |||||||||||| | | |  | || | ||||||||| | |||||||||||||| |||    
T  9815480 aagaaaatcatccatagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattg 9815381  T
Q  110 gtcatcatggtttttagttgtgattgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaa 209  Q
     ||| |||||      ||| ||  |||||| ||| ||||||  || |||||||||||||||||||||||||||||||||||||| |||| ||   || |     
T  9815380 atcaacatgg------gttctggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggat 9815287  T
Q  210 atctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaac 262  Q
    ||||||| ||||||||||   |||||||||||  |||||||||||||||||||    
T  9815286 atctatcaccaccaacagataattttgacaaattaactattgttttcttaaac 9815234  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 26354724 - 26354859
Alignment:
Q  141 ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaa 240  Q
    ||||||||||  || ||||||||||||||||||||||||| |||||||||||| |||| ||   || | ||||||| ||||||||||   ||||||||||    
T  26354724 ttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaa 26354823  T
Q  241 accaactattgttttcttaaacccagttaaatcctt 276  Q
    | |||| || |||||||||||| |  ||||||||||    
T  26354824 atcaacaatggttttcttaaacacgcttaaatcctt 26354859  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 22689473 - 22689530
Alignment:
Q  141 ttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaac 198  Q
    ||||||||||  || ||||||||| |||||||||||||||||||||||| ||| ||||    
T  22689473 ttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattgcagattaac 22689530  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 22651781 - 22651825
Alignment:
Q  232 ttttgacaaaccaactattgttttcttaaacccagttaaatcctt 276  Q
    |||||||||| |||| |||||||||||||||  ||||||||||||    
T  22651781 ttttgacaaatcaacaattgttttcttaaacaaagttaaatcctt 22651825  T

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