View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_69 (Length: 267)
Name: NF0688_low_69
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 37489697 - 37489542
Alignment:
| Q |
67 |
ttcaatacataacacatgatcttagcttttgatgaatctctcaatttcataacctgtttatacatcaatgattaatcatggtattgattccagtttcatt |
166 |
Q |
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| T |
37489697 |
ttcaatacataacacatgatcttagtttttgatgaatctctccatttcataacctgtttatacatcaatgattaatcatggtattgattccagtttcatt |
37489598 |
T |
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| Q |
167 |
aatcaaaggtaatttcaatttcttaatcgaaaaccatgtatgggtattgtaaattt |
222 |
Q |
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| T |
37489597 |
aatcaaaagtaatttcaatttcttaatcgaaaaccatgtatgggtattgtaaattt |
37489542 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 32716343 - 32716478
Alignment:
| Q |
38 |
gcatgcatcgcatctcttcatctttgtctttcaatacataacacatgatcttagcttttgatgaatctctcaatttcataacctgtttatacatcaatga |
137 |
Q |
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| T |
32716343 |
gcatgcatcacatctcttcatctttatcgttcaa-------cacatgatcttagtttttgataaatctctcaatttcataatttgtttgtccatggatga |
32716435 |
T |
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| Q |
138 |
ttaatcatggtattgattccagtttcattaatcaaaggtaatt |
180 |
Q |
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| T |
32716436 |
ttaatcatggtattgattccaatttcattaatcaaaagtaatt |
32716478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 46886319 - 46886501
Alignment:
| Q |
38 |
gcatgcatcgcatctcttcatctttgtctttcaatacataacacatg---------atcttagcttttgatgaatctctcaatttcataacctgtttata |
128 |
Q |
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| T |
46886319 |
gcatccatcgcatctcttcatctttgtcattcaacacataaaacatatcttaacatatcttagttttcgataaatctctcaatttcataatatgtttata |
46886418 |
T |
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| Q |
129 |
cat------caatgattaatcatggtattgattccagtttcattaatcaaaggtaatttcaatttcttaatcgaaaaccatgt |
205 |
Q |
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| T |
46886419 |
catatacatcgacgattaatgatggtattgatttcaattacattaatcaaaagtgattttaatttcttaattgaaaaccatgt |
46886501 |
T |
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