View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_70 (Length: 264)
Name: NF0688_low_70
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 14812310 - 14812456
Alignment:
| Q |
83 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
182 |
Q |
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| T |
14812310 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
14812409 |
T |
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| Q |
183 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
229 |
Q |
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| T |
14812410 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
14812456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 15259305 - 15259451
Alignment:
| Q |
83 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
182 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15259305 |
gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
15259404 |
T |
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| Q |
183 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
229 |
Q |
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| T |
15259405 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
15259451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
| Q |
83 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
182 |
Q |
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| T |
14804890 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
14804989 |
T |
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| Q |
183 |
ccataaccattatctctaat |
202 |
Q |
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| T |
14804990 |
cagcaaccattgtctctaat |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
| Q |
83 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
182 |
Q |
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||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
15251884 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
15251983 |
T |
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| Q |
183 |
ccataaccattatctctaat |
202 |
Q |
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| T |
15251984 |
cagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 17521870 - 17521724
Alignment:
| Q |
83 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17521870 |
gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
17521771 |
T |
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| Q |
183 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
17521770 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactctt |
17521724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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