View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_75 (Length: 258)
Name: NF0688_low_75
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_75 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 32061125 - 32060911
Alignment:
| Q |
27 |
atggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttg |
126 |
Q |
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| T |
32061125 |
atggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttg |
32061026 |
T |
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| Q |
127 |
cgggatttaatgatttaactatgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtatt |
226 |
Q |
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| T |
32061025 |
cgggatttaatgatttaactgtgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtatt |
32060926 |
T |
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| Q |
227 |
atcctcatagtaatt |
241 |
Q |
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| T |
32060925 |
atcctcatagtaatt |
32060911 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 11595346 - 11595256
Alignment:
| Q |
151 |
atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaatt |
241 |
Q |
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| T |
11595346 |
atgcttggaaaacaaggatggaagctccaaactgaacctgatactttatttgctaaggtgttcaaggcaagctattcccctcgtagtaatt |
11595256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 11109188 - 11109113
Alignment:
| Q |
151 |
atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtatt |
226 |
Q |
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| T |
11109188 |
atgcttggaaaacaaggatggaagctccaaacttaacttgatactttagttgctaaggtgttcaaggcaaggtatt |
11109113 |
T |
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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 39530810 - 39530898
Alignment:
| Q |
48 |
aatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaa |
136 |
Q |
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| T |
39530810 |
aatagaggaatgcattggttataatggaacaaactttcggttcataaaaggcatggaggaatgggttttaaggatcttgcggcatttaa |
39530898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 37590200 - 37590307
Alignment:
| Q |
151 |
atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt |
250 |
Q |
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| T |
37590200 |
atgcttgggaaacaaggatggaagtttcaaactgaatcggatacgctggtttctaaggtgttcaaagcaaggtactttcctcttggtaactatcttgggt |
37590299 |
T |
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| Q |
251 |
taaagtta |
258 |
Q |
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| T |
37590300 |
caaagtta |
37590307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 3237119 - 3237307
Alignment:
| Q |
47 |
taatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaact |
146 |
Q |
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| T |
3237119 |
taataaaggaattcattggttggcgtgggataaattgtcggttcacaagaggcatggtggaatgggattcaaagatcttgcggcgtttaatg-------t |
3237211 |
T |
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| Q |
147 |
atgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaatta |
242 |
Q |
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| T |
3237212 |
agcaatgctcggaaagcaagggtggaaattccaaactgaaccagacactttagtttccaaggttttcaaggcaaggtattatcctcatggtaatta |
3237307 |
T |
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