View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_76 (Length: 256)
Name: NF0688_low_76
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 18478622 - 18478832
Alignment:
| Q |
34 |
agaattccaactaaaatacaaagttatcagtcaaaaaagaagaataagtaagagtgttccaacaaaaatacaaagttacgaagaacttgatacattcata |
133 |
Q |
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| T |
18478622 |
agaattccaactaaaatacaaagttatcagtcaaaaaagaagaataagtaagagtgttccaacaaaaatacaaagttacgaagaacttgatacattcata |
18478721 |
T |
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| Q |
134 |
ctaacaccggacacaacacaaataataatgtgagaaagttgaataatttaaatgtaactgcatctattggtttgtgttgcaggttagctttacattagaa |
233 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18478722 |
ctaacatcggacacaacacagataataatgtgagaaagtagaataatttaaatgtaactgcatctattggtttgtgtcgcaggttagctttacattagaa |
18478821 |
T |
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| Q |
234 |
gtctctgtgct |
244 |
Q |
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||||||||||| |
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| T |
18478822 |
gtctctgtgct |
18478832 |
T |
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