View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_79 (Length: 252)
Name: NF0688_low_79
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 4211121 - 4210990
Alignment:
| Q |
114 |
atctttatagttgcacttgctctccacaatcaattaatttgaagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcc |
213 |
Q |
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| T |
4211121 |
atctttatagttgcccttcctctccacaatcaattaatgtgaagtccttcaagaaacaacgttttaaagagatccattacatgtttatttagaacaagcc |
4211022 |
T |
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| Q |
214 |
caacttcaattccacctttaccatctctgctc |
245 |
Q |
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| T |
4211021 |
caacttcaattccacctttaccatctttgctc |
4210990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 4234785 - 4234654
Alignment:
| Q |
114 |
atctttatagttgcacttgctctccacaatcaattaatttgaagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcc |
213 |
Q |
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| T |
4234785 |
atctctatagttgcgcatgttctccacaatcaattaatgcaaagtccttcaacaaacaaagttctaaagagattcattacatggttattaagaacaagcc |
4234686 |
T |
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| Q |
214 |
caacttcaattccacctttaccatctctgctc |
245 |
Q |
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| T |
4234685 |
caacttcaattccacctttaccatctttgctc |
4234654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4211202 - 4211109
Alignment:
| Q |
1 |
tttttaaaatcaatttatttgaaaatttctgtaccaccaaagttagaagataaaacatatttcaagaaaaaataaagattaatctttatagttg |
94 |
Q |
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| T |
4211202 |
tttttaaaatcaatttatttgaaaaatttcgtaccaccaaaattacaagctaaaacatattttaagaaaaaagaaagattaatctttatagttg |
4211109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 4190114 - 4190026
Alignment:
| Q |
156 |
agtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgct |
244 |
Q |
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| T |
4190114 |
agtccttcaagaaacaaattgctaaagagatccattacatgcttattaagaacaagaccaatttcaaccccaccattgccatctttgct |
4190026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 4247319 - 4247248
Alignment:
| Q |
158 |
tccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacc |
229 |
Q |
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| T |
4247319 |
tccttcatgaaacaaagtgctaaagaaattcattacatgtttattaagaacaagcccaacttcaactccacc |
4247248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 4251754 - 4251667
Alignment:
| Q |
158 |
tccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgctc |
245 |
Q |
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| T |
4251754 |
tccttcaagaaacaaagtgctaaagatatccattacaggtttattaagagcaagcccaacttctatccctcctttactatctttgctc |
4251667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 4193235 - 4193145
Alignment:
| Q |
155 |
aagtccttcaagaaacaactttctaaagagatccatttcatgtttatttagaacaagcccaacttcaattccacctttaccatctctgctc |
245 |
Q |
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| T |
4193235 |
aagtccttcaaaaaagaaactgctaaagagatccattacaagcttattaagaacaagctcaacttcaaccccaccattgccatctttgctc |
4193145 |
T |
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