View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_80 (Length: 251)

Name: NF0688_low_80
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_80
NF0688_low_80
[»] chr4 (2 HSPs)
chr4 (1-240)||(7853525-7853764)
chr4 (1-49)||(22540923-22540971)
[»] chr3 (1 HSPs)
chr3 (1-53)||(16663345-16663397)
[»] chr7 (1 HSPs)
chr7 (1-49)||(37158063-37158111)
[»] chr1 (2 HSPs)
chr1 (1-49)||(2994654-2994702)
chr1 (1-49)||(32560869-32560917)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7853764 - 7853525
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcatcgaatttttagtcgagcatgcttaataatgagtttacttcatttttaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853764 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcatcgaatttttagtcgagcatgcttaataatgagtttacttcatttttaaaat 7853665  T
Q  101 tgggttaaatttttgtattataattaagatttggtaaaagagaatttaaattaagactgcaaatctaaactcatccccactaacatcaatgacattgagg 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853664 tgggttaaatttttgtattataattaagttttggtaaaagagaatttaaattaagactgcaaatctaaactcatccccactaacatcaatgacattgagg 7853565  T
Q  201 cttggctacactagattgtttgcacttaacacgtattcat 240  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  7853564 cttggctacactagattgtttgcacttaacacggattcat 7853525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22540971 - 22540923
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcat 49  Q
    ||||||||||||||||||||| ||| | ||||||||| | |||||||||    
T  22540971 gaattcacaaaataaaaattgctaaagaaaatttcatatttttgttcat 22540923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16663397 - 16663345
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcatcgaa 53  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||||||||||    
T  16663397 gaattcacaaaataaaaattggtaaagaaaatttcatgtttttgttcatcgaa 16663345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37158063 - 37158111
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcat 49  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  37158063 gaattcacaaaataaaaattgctaaagaaaatttcatgtttttgttcat 37158111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2994654 - 2994702
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcat 49  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  2994654 gaattcacaaaataaaaattgctaaagaaaatttcatgtttttgttcat 2994702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32560869 - 32560917
Alignment:
Q  1 gaattcacaaaataaaaattgataatgtaaatttcatgtatttgttcat 49  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  32560869 gaattcacaaaataaaaattgctaaagaaaatttcatgtttttgttcat 32560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University