View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_81 (Length: 251)
Name: NF0688_low_81
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 7633679 - 7633922
Alignment:
| Q |
3 |
ctggctctggcaaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatctaactatgctacaataaaagacaaga |
102 |
Q |
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| T |
7633679 |
ctggctctggcaaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatccaactatgctacaataaaagacaaga |
7633778 |
T |
|
| Q |
103 |
aaatctcaagaattttaaacatgaatacgacccattagattttttatgctatgaaaagtcaatttgttgttccattcataaacaataagaatcattatta |
202 |
Q |
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| T |
7633779 |
aaatctcaagaattttaaacatgaatacgacccattagatttttcatgctatgaaaagtcaatttgttgttccattcataaacaataagaatcattatta |
7633878 |
T |
|
| Q |
203 |
ttatttttgggatactttattaccactcgttatttcatctcact |
246 |
Q |
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| T |
7633879 |
ttatttttgggatactttattaccactcgttatttcatctcact |
7633922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 42146933 - 42146688
Alignment:
| Q |
4 |
tggctctggcaaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatctaactatgctacaataaaagacaa-ga |
102 |
Q |
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|||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
42146933 |
tggctctggcaaacacaattgagcatgactcaacacatggacccaattcatgctcattagatgcctacatagctaacaatgctacaataaaagacaacaa |
42146834 |
T |
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| Q |
103 |
aaatctcaagaattttaaacatgaatacgacccattagattt-tttatgctatgaaaagtcaatttgttgttccattcataaacaataagaatcatta-t |
200 |
Q |
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| T |
42146833 |
aaatctcaagaattttaaacatgaatacgaccctttagatttatttatactgtgaaaagtcaatttgctgttccattcataaataataaaaatcattatt |
42146734 |
T |
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| Q |
201 |
tattatttttgggatactttattaccactcgttatttcatctcact |
246 |
Q |
| |
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|||||||||||||||| |||| |||||||| ||||||||| ||||| |
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| T |
42146733 |
tattatttttgggatattttactaccactcattatttcatatcact |
42146688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 1860558 - 1860696
Alignment:
| Q |
4 |
tggctctggcaaccacaattgatcacgactcaacacatggacccaattcatgctcattagatgcctacatatctaactatgctacaataaaagacaagaa |
103 |
Q |
| |
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|||| |||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| || |
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| T |
1860558 |
tggcactggcaaccacagtcgatcgcgactcaaccattggacccaattcatgctcattagatgcctacatagctaacaatcctacaataaaagacaacaa |
1860657 |
T |
|
| Q |
104 |
aatctcaagaattttaaacatgaatacgacccattagat |
142 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
1860658 |
aatctcaagaattttaaacatgaatacgactcattagat |
1860696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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