View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_83 (Length: 251)
Name: NF0688_low_83
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39472348 - 39472108
Alignment:
| Q |
1 |
ttttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctgttttcttaattgatgtctggttctttggatgaatatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472348 |
ttttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctgttttcttaattgatgtctggttctttggatgaatatgg |
39472249 |
T |
|
| Q |
101 |
aaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39472248 |
aaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagtggagc |
39472149 |
T |
|
| Q |
201 |
caaattggaaaatatagctaatgtatttcatgttttctgtg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472148 |
caaattggaaaatatagctaatgtatttcatgttttctgtg |
39472108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 39453315 - 39453520
Alignment:
| Q |
34 |
aaatatggtttgcaagtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaat |
132 |
Q |
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| T |
39453315 |
aaatatggtttgcaagtgtttctcatctgttttcttaatttggtgtctgcttctttggagtaacttggaaccgttaaatgtgtctcattgctcctggaat |
39453414 |
T |
|
| Q |
133 |
gtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtatttcatg |
232 |
Q |
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| T |
39453415 |
gtccttgtagagttggattatcgatta---attcttaagtggtacattgaattgatcacaagttgagccaaattggaaaatatagctaatgtatttcaag |
39453511 |
T |
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| Q |
233 |
ttttctgtg |
241 |
Q |
| |
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||||||||| |
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| T |
39453512 |
ttttctgtg |
39453520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 39412731 - 39412490
Alignment:
| Q |
2 |
tttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatgg |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||| | ||| |||||||||||||||| ||| |
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| T |
39412731 |
tttgagaatgctgaatcttagaaccgtgtttcaaatatggtttgcaagtttttcacatttgttttctttatttggtgtttggttctttggatgaacttgg |
39412632 |
T |
|
| Q |
101 |
aaccgttaaatatgactcagttctcctggaatgtcctt-gtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggag |
199 |
Q |
| |
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|||| ||||| || ||| | || |||||||| || |||| |||||||||||||||||||||| ||||||||||||| || ||||||||||| |||| |
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| T |
39412631 |
aaccattaaacatttatcattgcttttggaatgttttttgtagagttgtattatggataatgaattattaagtggtacatcgaattgaacacaagtggag |
39412532 |
T |
|
| Q |
200 |
ccaaattggaaaatatagctaatgtatttcatgttttctgtg |
241 |
Q |
| |
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||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
39412531 |
ccaaattggtaaatatagctaatacatttcaagttttctgtg |
39412490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 39139285 - 39139462
Alignment:
| Q |
49 |
gtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttg |
147 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||| ||| | ||||||||| |||| || |||||| |
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| T |
39139285 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatggaaccgttgagtatgtctcgttgctcctggaacgtccatgcagtgtta |
39139384 |
T |
|
| Q |
148 |
tattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtat |
226 |
Q |
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| T |
39139385 |
tattatggataatgaattc-taagtggtacatcgagttgaacacaaatggagccaagttggaaaatatagctaatgtat |
39139462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 39153625 - 39153841
Alignment:
| Q |
1 |
ttttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctgttttcttaa-ttgatgtctggttctttggatgaatatg |
99 |
Q |
| |
|
|||||||||| | ||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||| ||| | ||||||| |||||||||| || |
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| T |
39153625 |
ttttgagaattttgaatcttagaaacatgtttcaaatatggtttacaagtgtttcacattcgttttcttaagttggtatctggttatttggatgaacttg |
39153724 |
T |
|
| Q |
100 |
gaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggag |
199 |
Q |
| |
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|| || || ||| || |||| | ||||||||||| |||||||| | | || |||||| ||||||||||||| ||| |||||| ||||||||||| |||| |
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| T |
39153725 |
gagccatttaatgtgtctcattgctcctggaatgcccttgtagaggttgataatggattatgaattcttaagcggtgcattgaattgaacacaagtggag |
39153824 |
T |
|
| Q |
200 |
ccaaattggaaaatata |
216 |
Q |
| |
|
||||| ||||||||||| |
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| T |
39153825 |
ccaaaatggaaaatata |
39153841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 39420965 - 39420869
Alignment:
| Q |
128 |
ggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtat |
226 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| ||||||||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
39420965 |
ggaatgtccttgtagagttggattatcgattatgaattcttacgtggtacattgaattga--acaagtggagccaaaatggaaaatatagctaatgtat |
39420869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 39421081 - 39421029
Alignment:
| Q |
2 |
tttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgttt |
54 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| ||||||||||||||| ||||| |
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|
| T |
39421081 |
tttgataatgttgaatcttagaaccatgtttcaaatatggtttgcaaatgttt |
39421029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 49 - 226
Target Start/End: Original strand, 19809541 - 19809718
Alignment:
| Q |
49 |
gtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttg |
147 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||| |||| | |||||||||||||| |||||||||| |
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| T |
19809541 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatggaaccgttgagtatgtctcattgctcctggaatgtccatgtagtgttg |
19809640 |
T |
|
| Q |
148 |
tattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtat |
226 |
Q |
| |
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| T |
19809641 |
tattatggataatgaattc-taagtggtacatcgagttgaacacaaatggagccaaattggaaaatatagctaatgtat |
19809718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 29485756 - 29485677
Alignment:
| Q |
130 |
aatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaa |
210 |
Q |
| |
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||||| ||||||| |||| | ||||||| | || |||||||||| ||| |||||||||||||||| ||||||||| ||||| |
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|
| T |
29485756 |
aatgtacttgtagagttggagtatggattaagagttcttaagtg-tacgttgagttgaacacaagtggagccaaaatggaa |
29485677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 19809516 - 19809546
Alignment:
| Q |
2 |
tttgagaatgtggaatcttagaaccgtgttt |
32 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
19809516 |
tttgagaatgtggaatcttagaaccgtgttt |
19809546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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