View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_84 (Length: 251)
Name: NF0688_low_84
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_84 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 25923687 - 25923896
Alignment:
| Q |
42 |
ttacttgattgaaaattactcaatacaacatttcatcaaacagttatacttattgagtactcttcctctcccacaaccaacaaataaccaccttcttcaa |
141 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25923687 |
ttacttgattgataatttctcaatactacatttcatcaaagagtgatattaattgagtactcttcctctcccacaaccaacaaatgaccaccttcttcaa |
25923786 |
T |
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| Q |
142 |
tcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||| |
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| T |
25923787 |
tcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttcctcctccttctaccgtcacactctc |
25923886 |
T |
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| Q |
242 |
aaaccctacc |
251 |
Q |
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|||||||||| |
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| T |
25923887 |
aaaccctacc |
25923896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 25904893 - 25905053
Alignment:
| Q |
91 |
ttattgagtactcttcctctcccacaaccaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacact |
190 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25904893 |
ttattgagtactcttcctgtcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacact |
25904992 |
T |
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| Q |
191 |
aacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctacc |
251 |
Q |
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| T |
25904993 |
aacttcaaatccaacttcaccctttccacctccttccaccgtcacactctcaaaccctacc |
25905053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 25883502 - 25883719
Alignment:
| Q |
42 |
ttacttgattgaaaattactcaatacaacatttcatcaa--------acagttatacttattgagtactcttcctctcccacaaccaacaaataaccacc |
133 |
Q |
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| T |
25883502 |
ttacttgattgaaaatttctcaatactacatttcatcaattcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccacc |
25883601 |
T |
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| Q |
134 |
ttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||| |
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| T |
25883602 |
ttcttcaatcaccttaacaccactctcatttgctctactaagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtc |
25883701 |
T |
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| Q |
234 |
acactctcaaaccctacc |
251 |
Q |
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| T |
25883702 |
acactctcaaaccctacc |
25883719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 25961551 - 25961373
Alignment:
| Q |
73 |
ttcatcaaacagttatacttattgagtactcttcctctcccacaaccaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctact |
172 |
Q |
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||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961551 |
ttcatcaaagagtgatatttattgagtactctaactctcccacaagaaacaaataaccaccttcttcaatcaccttaacaccactctcatttgctctact |
25961452 |
T |
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| Q |
173 |
aagatgctcacaaacactaacttcaaatccaacttcgctctttccacctccttccaccgtcacactctcaaaccctacc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||| |
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| T |
25961451 |
aagatgctcacaaacactaacttcaaatccaacttcaccttttccacccccttctaccgtcacactctcaaaccctacc |
25961373 |
T |
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