View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_86 (Length: 247)
Name: NF0688_low_86
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_86 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 31214391 - 31214631
Alignment:
| Q |
7 |
ctcacactaatatcatctgtcctaccacatgtctgtgtcggcattgtctgtcctgccatgaactaacgaatgcaatgtaagatcgaatcatgatatcatc |
106 |
Q |
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| T |
31214391 |
ctcacactaatatcatctgtcctaccacatgtccgtgtcggcattgtctgtcctaccatgaactaacgaatgcaatgtaagatcgaatcatgatatcatc |
31214490 |
T |
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| Q |
107 |
aaaaatgcaattctccaaaccataccaattgaattgaaaaaagtttaatatacgcattgaaaccaaatcaaatcaaatatcacacacattcacaaatcaa |
206 |
Q |
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| T |
31214491 |
aaaaatgcaattctccaaaccataccaattgaattgaaaaaagtttaatatacgcattgaaaccaaatcaaatcaaatatcacacacattcacaaatcaa |
31214590 |
T |
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| Q |
207 |
ccccctaactaaacttgttgcacatttcatttcatttcaac |
247 |
Q |
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| T |
31214591 |
ccccctaactaaacttgttgcacatttcatttcatttcaac |
31214631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 30499388 - 30499195
Alignment:
| Q |
51 |
tgtctgtcctgccatgaactaacgaatgcaatgtaa-----gatcgaatcatgatatcatcaaaaatgcaattctccaaaccataccaattgaattg-aa |
144 |
Q |
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| T |
30499388 |
tgtctgtcctaccatgaactaacgaatgcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaaa |
30499289 |
T |
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| Q |
145 |
aaaagtttaatatacgcattgaaaccaaatcaaatcaaatatcacacacattcacaaatcaaccccctaactaaacttgttgcacatttcatttcatttc |
244 |
Q |
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| T |
30499288 |
aaaagtttattatacgcattg-----aaatcaaatcaaatatcacacacattcacaattcaaccctctaaccaa----cttgcacatttcatttcatttc |
30499198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 31214909 - 31214870
Alignment:
| Q |
50 |
ttgtctgtcctgccatgaactaacgaatgcaatgtaagat |
89 |
Q |
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| T |
31214909 |
ttgtctgtcctaccatgaactaacgaatgcaatgtaagat |
31214870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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