View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_89 (Length: 229)
Name: NF0688_low_89
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 2507366 - 2507561
Alignment:
| Q |
15 |
cataggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2507366 |
cataggcacgtggattgatagaagcttttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
2507465 |
T |
|
| Q |
115 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2507466 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacatagtgtttcagaagcacttg |
2507561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 2514458 - 2514651
Alignment:
| Q |
17 |
taggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2514458 |
taggcacgtggattgatagaagcttttgggtcactcataagagtcctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
2514557 |
T |
|
| Q |
117 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
2514558 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacataatgtttcagaagcacttg |
2514651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 2434555 - 2434407
Alignment:
| Q |
62 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
161 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| | ||| || |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
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| T |
2434555 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
2434456 |
T |
|
| Q |
162 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttg |
210 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||| |||||| |
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| T |
2434455 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttg |
2434407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 2519204 - 2519356
Alignment:
| Q |
51 |
tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc |
150 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||| | || | | |||||||||| ||| ||||||||| ||| |||| ||||| || |
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| T |
2519204 |
tcataagattcctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtc |
2519303 |
T |
|
| Q |
151 |
aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaa |
203 |
Q |
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|| ||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2519304 |
aatgatgttcatgtctgattctttaggaaaaccagacacatagtgtttcagaa |
2519356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 2430975 - 2430827
Alignment:
| Q |
62 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
161 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| |||||||||| || ||||| || | |
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| T |
2430975 |
ctcatgtaaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattca |
2430876 |
T |
|
| Q |
162 |
ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttg |
210 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| |||||| |
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| T |
2430875 |
tgtctgattctttaggaaaaccagacacatagtccttcagaatcacttg |
2430827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 2498870 - 2499026
Alignment:
| Q |
51 |
tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc |
150 |
Q |
| |
|
|||| ||| |||||||| | ||||||||||||||||| | |||||| | || ||| ||||||||||||| ||||||||||||| | || |||| || |
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| T |
2498870 |
tcatgagattcctcatgaatggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttc |
2498966 |
T |
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| Q |
151 |
aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttg |
210 |
Q |
| |
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|| |||||| | |||||||||||||||||||||||| || |||| ||||||| |||||| |
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| T |
2498967 |
aataatgttcatgtctgattctttaggaaaaccagatacatagtccttcagaatcacttg |
2499026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 1458014 - 1457882
Alignment:
| Q |
62 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
161 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||| | || ||| |||||||||||||| |||||| || ||| | || ||||||||||||| || | |
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| T |
1458014 |
ctcaggtaaggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca |
1457915 |
T |
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| Q |
162 |
ggtctgattctttaggaaaaccagacacgtagt |
194 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |
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| T |
1457914 |
tgtctgattccttaggaaaaccagacacatagt |
1457882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 2427721 - 2427589
Alignment:
| Q |
62 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
161 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||| | || ||| |||||||||||||| |||||| || ||| | || ||||||||||||| || | |
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| T |
2427721 |
ctcaggtaaggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca |
2427622 |
T |
|
| Q |
162 |
ggtctgattctttaggaaaaccagacacgtagt |
194 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |
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| T |
2427621 |
tgtctgattccttaggaaaaccagacacatagt |
2427589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 11846044 - 11846008
Alignment:
| Q |
57 |
gagtcctcatgtaaggatcacaagacaagtaaagatt |
93 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||| |
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|
| T |
11846044 |
gagtcctcgtgtaaggttcacaagacaagtaaagatt |
11846008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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