View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_9 (Length: 477)

Name: NF0688_low_9
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_9
NF0688_low_9
[»] chr3 (6 HSPs)
chr3 (244-464)||(10710172-10710392)
chr3 (287-443)||(30103946-30104105)
chr3 (271-382)||(2281568-2281679)
chr3 (275-382)||(14264182-14264289)
chr3 (275-385)||(16015769-16015879)
chr3 (151-191)||(30103788-30103828)
[»] chr8 (6 HSPs)
chr8 (292-456)||(24370831-24370998)
chr8 (275-382)||(16217807-16217914)
chr8 (275-377)||(15063859-15063961)
chr8 (127-191)||(16217998-16218062)
chr8 (271-452)||(24272075-24272259)
chr8 (127-188)||(24371101-24371162)
[»] chr4 (4 HSPs)
chr4 (252-382)||(17379736-17379865)
chr4 (271-437)||(12461406-12461575)
chr4 (244-351)||(11922961-11923068)
chr4 (57-191)||(17379927-17380062)
[»] scaffold0113 (1 HSPs)
scaffold0113 (275-437)||(22422-22587)
[»] chr2 (2 HSPs)
chr2 (288-454)||(39665812-39665981)
chr2 (129-191)||(23281958-23282019)
[»] chr7 (2 HSPs)
chr7 (271-461)||(16366797-16366990)
chr7 (130-180)||(16176616-16176666)
[»] chr5 (6 HSPs)
chr5 (360-464)||(17300779-17300883)
chr5 (361-459)||(17287905-17288003)
chr5 (127-191)||(23341328-23341391)
chr5 (127-191)||(25559160-25559224)
chr5 (296-358)||(23341537-23341599)
chr5 (275-381)||(26059867-26059973)
[»] scaffold0171 (1 HSPs)
scaffold0171 (271-454)||(4567-4750)
[»] chr6 (3 HSPs)
chr6 (295-382)||(21738133-21738220)
chr6 (93-187)||(21737931-21738025)
chr6 (363-432)||(22785119-22785191)
[»] scaffold2087 (2 HSPs)
scaffold2087 (295-454)||(878-1039)
scaffold2087 (128-191)||(713-776)
[»] scaffold0064 (1 HSPs)
scaffold0064 (127-191)||(6219-6280)
[»] scaffold0128 (1 HSPs)
scaffold0128 (275-368)||(14558-14651)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 244 - 464
Target Start/End: Original strand, 10710172 - 10710392
Alignment:
Q  244 tgctcgtaattatgtggtaaaattagatatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattacttt 343  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  10710172 tgctcgtaattatgtggtaaaattaggtatatgaaaattgttgaaaacttgt---tgatgcttaattttcattgttgatatgtgttgaagtgattacttt 10710268  T
Q  344 gagaatttggcttaacttagtgaaaatgatga---tgttgttattaattgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttga 440  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||    
T  10710269 gagaatttggcttaacttagtgaaaatgatgatgttgttgttattaattgatgaattgatgaattatgtgctatgaatattgttgggtatattttgttga 10710368  T
Q  441 tgagaattcatgaacttgatgatg 464  Q
    |||||||||||||| |||||||||    
T  10710369 tgagaattcatgaatttgatgatg 10710392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 30103946 - 30104105
Alignment:
Q  287 aaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatgatgttgttatta 386  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | ||||| ||||||||||| ||     
T  30103946 aaaacttgttgttgatacttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaaaatgattaaaataatgatgttgttgttg 30104045  T
Q  387 at---tgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatga 443  Q
     |   ||||||||| ||||||||| || |||| |||||||||||||||| ||| ||||||    
T  30104046 tttgatgatgaatttatgaattatatgttatgaatgtttttgggtatatgttggtgatga 30104105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 382
Target Start/End: Complemental strand, 2281679 - 2281568
Alignment:
Q  271 tatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaat 370  Q
    |||||| || |||||||||| ||||||||||||||||| ||||||||||||||| || | |  || | ||||||| ||||| |||||| || ||| ||||    
T  2281679 tatatggaagttgttgaaaacttgttgttgatgcttaaatttcattgttgatatatgctaagttgttcactttgaaaatttagcttaaattggtgtaaat 2281580  T
Q  371 gatgatgttgtt 382  Q
    ||||||| ||||    
T  2281579 gatgatggtgtt 2281568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 14264289 - 14264182
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    |||||||||||||||| || |||||||||| | | |||| ||||||| || || |||| |||| ||||||||| | | |||||| || |||||||||||     
T  14264289 tgaaaattgttgaaaactttttgttgatgcatgaatttcgttgttgacatatgatgaattgatgactttgagattctagcttaaattggtgaaaatgata 14264190  T
Q  375 atgttgtt 382  Q
    ||||||||    
T  14264189 atgttgtt 14264182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 385
Target Start/End: Original strand, 16015769 - 16015879
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    |||||||||||||||| ||||||||||||| | | ||| |||||||||||  | |||   ||| ||||||||| | | |||||| || ||||||||| ||    
T  16015769 tgaaaattgttgaaaacttgttgttgatgcatgaattttattgttgatataagatgagtcgatgactttgagattctagcttaaattggtgaaaatggtg 16015868  T
Q  375 atgttgttatt 385  Q
    ||||| |||||    
T  16015869 atgttcttatt 16015879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 30103788 - 30103828
Alignment:
Q  151 tctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  30103788 tctacttaataagctataatctaccttttcacttatgggtc 30103828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 292 - 456
Target Start/End: Complemental strand, 24370998 - 24370831
Alignment:
Q  292 ttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatgatg---ttgttattaat 388  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |  ||||||||||||||   ||||| ||       
T  24370998 ttgtcgttgatgcttaattttcattgttgatatctgttgaagtgattactttgagaatttggcttaaaatgatgaaaatgatgatgtttttgttgtttga 24370899  T
Q  389 tgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaact 456  Q
    ||||||||||||||||| | ||||||| ||||| |||||||||| ||| |||||| || |||||||||    
T  24370898 tgatgaattcatgaattttatgctatgaatgttgttgggtatatgttggtgatgataagtcatgaact 24370831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 16217914 - 16217807
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    ||||| |||||||||| ||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||| ||| ||||||  | ||||||||||||    
T  16217914 tgaaatttgttgaaaacttgttgttgatgcttaaatttcactattgataagtgttgaagtgattactttgagattttagcttaaaatggtgaaaatgatg 16217815  T
Q  375 atgttgtt 382  Q
     |||||||    
T  16217814 ttgttgtt 16217807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 15063961 - 15063859
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||||||||||| |||| |  || ||||||||||||||| |||||| || ||||||||| ||    
T  15063961 tgaaagttgttgaaaacttgttgttgatgcataaatttcattgttgatatatgttaagttgtttactttgagaatttagcttaaattggtgaaaatggtg 15063862  T
Q  375 atg 377  Q
    |||    
T  15063861 atg 15063859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 16218062 - 16217998
Alignment:
Q  127 acaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||  |||||||||    
T  16218062 acaaggtaagggggataggtttgttctacttaataagctataatcttgtttttcttttatgggtc 16217998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 452
Target Start/End: Complemental strand, 24272259 - 24272075
Alignment:
Q  271 tatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgatt-actttgagaatttggcttaacttagtgaaaa 369  Q
    ||||||||| | |||  ||| ||||||||||||||||| ||  ||||||| | | |||| ||||| || ||||||||| ||| |||||| || |||||||    
T  24272259 tatatgaaattggttagaaacttgttgttgatgcttaaattctattgttgttgtatgtt-aagtggttcactttgagattttagcttaaattggtgaaaa 24272161  T
Q  370 tgatgatgttgtt----attaattgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatg 452  Q
    ||||||| |||||    |||||| ||||||||||||| |||| || ||||  |||| |||||||||| ||  || ||||||||||||    
T  24272160 tgatgattttgttgatgattaat-gatgaattcatgatttatatgatatgagtgttgttgggtatatgtttgtgttgagaattcatg 24272075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 24371162 - 24371101
Alignment:
Q  127 acaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgg 188  Q
    |||| ||||||||||||| |  |||||||| |||||||||||||||| ||||||||||||||    
T  24371162 acaatgtaagggggataggtagattctacttaataagctataatctactttttcacttatgg 24371101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 17379865 - 17379736
Alignment:
Q  252 attatgtggtaaaattagatatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaattt 351  Q
    ||||||||||||| || | |||||||||||||||| || |  |||||||||||||||||||||||||||||||| ||  || ||||||||||||||||||    
T  17379865 attatgtggtaaattttggtatatgaaaattgttggaacta-gttgttgatgcttaattttcattgttgatatgggtctaaatgattactttgagaattt 17379767  T
Q  352 ggcttaacttagtgaaaatgatgatgttgtt 382  Q
    |||||||||| |||||||||| |||||||||    
T  17379766 ggcttaacttggtgaaaatgacgatgttgtt 17379736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 437
Target Start/End: Complemental strand, 12461575 - 12461406
Alignment:
Q  271 tatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaat 370  Q
    ||||||||| |||||||||| | ||||||||||| ||| ||||||||||||||| |||| |  || | ||||||||||||| |||||| |||||||||||    
T  12461575 tatatgaaagttgttgaaaactcgttgttgatgcataaatttcattgttgatatatgttaagttgttcactttgagaatttagcttaaattagtgaaaat 12461476  T
Q  371 gatgatgttgttattaattga---tgaattcatgaattatgtgctatggatgtttttgggtatattttgt 437  Q
    |||| ||||||| || ||| |   ||||||||||| |||||||||||  |||||||||||||||| ||||    
T  12461475 gatgttgttgttgttgattaatattgaattcatgatttatgtgctataaatgtttttgggtatatgttgt 12461406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 11922961 - 11923068
Alignment:
Q  244 tgctcgtaattatgtggtaaaattagatatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattacttt 343  Q
    ||||| ||||||||||||||| || | ||| ||||| |||||  ||| |||||||||||||||||||||||||||||  |  ||||||||||||||||||    
T  11922961 tgctcataattatgtggtaaatttgggtatgtgaaatttgttataaacttgttgttgatgcttaattttcattgttgtaacatgttgaagtgattacttt 11923060  T
Q  344 gagaattt 351  Q
    ||||||||    
T  11923061 gagaattt 11923068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 17380062 - 17379927
Alignment:
Q  57 gaaaagtgaagaggat-ctaggattctttggagag--taaagattcttggaggttagcttaagcttaatgattacaaggtaagggggatagttttattct 153  Q
    ||||||||||||| |  ||||||||| ||||||||  | |||||||||| || |||| |||||||| | || ||||||||||||||||||  |||  |||    
T  17380062 gaaaagtgaagagaaagctaggattcattggagagagtgaagattcttg-agattagtttaagcttcaggaatacaaggtaagggggatatgtttgctct 17379964  T
Q  154 actaaataagctataatctagtttttcacttatgggtc 191  Q
    | | ||||||||||||||||| ||||||||||||||||    
T  17379963 agttaataagctataatctag-ttttcacttatgggtc 17379927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 275 - 437
Target Start/End: Original strand, 22422 - 22587
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||| ||||||| |||| |  || ||||||||||| ||| |||||| |||||||| ||||||    
T  22422 tgaaagttgttgaaaacttgttgttgatgcataaatttcattattgatatatgttaagttgtttactttgagagtttagcttaaattagtgaatatgatg 22521  T
Q  375 atgttgttattaat---tgatgaattcatgaattatgtgctatggatgtttttgggtatattttgt 437  Q
    |||||||| || ||   |||||||||||||| ||||||| |||  ||||| |||||||||| ||||    
T  22522 atgttgttgttgattaatgatgaattcatgatttatgtgatataaatgttgttgggtatatgttgt 22587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 288 - 454
Target Start/End: Original strand, 39665812 - 39665981
Alignment:
Q  288 aaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatgatgttgttattaa 387  Q
    ||||||||||||||||||||| ||||||| ||| | |||||||||||||||| |||||   |||||||||| || ||||||||| | |||||||| || |    
T  39665812 aaatttgttgttgatgcttaaatttcattcttggtgtgtgttgaagtgattaatttgaagttttggcttaaattggtgaaaatgttaatgttgttgttga 39665911  T
Q  388 t---tgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaa 454  Q
    |   ||||||||||||||||| | ||||||| ||||| ||||||| || ||| |||||| || |||||||    
T  39665912 tttatgatgaattcatgaattgtatgctatgaatgttgttgggtacatgttggtgatgataaatcatgaa 39665981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 23282019 - 23281958
Alignment:
Q  129 aaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||||| ||||||||| |||| ||||||||||| ||||||||| |||||||||||| ||||    
T  23282019 aaggtaagtgggatagttctattatactaaataagttataatcta-tttttcacttataggtc 23281958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 461
Target Start/End: Complemental strand, 16366990 - 16366797
Alignment:
Q  271 tatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaat 370  Q
    |||| |||| |||||||||| || |||||||||| ||| ||||||||||||||| |||| |  || |||||||||||| || |||||| || ||||| ||    
T  16366990 tatacgaaagttgttgaaaacttattgttgatgcataaatttcattgttgatatatgttaagttgtttactttgagaaattagcttaaattggtgaagat 16366891  T
Q  371 gatgatgttgttattaat---tgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaacttgatg 461  Q
    |||||||||||| || ||   || |||||||||||||| || |||||  ||||| |||||||||| ||  || ||||||| |||||| ||||||    
T  16366890 gatgatgttgttgttcattagtgttgaattcatgaattgtgagctataaatgttcttgggtatatgtttgtgttgagaatccatgaatttgatg 16366797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 16176666 - 16176616
Alignment:
Q  130 aggtaagggggatagttttattctactaaataagctataatctagtttttc 180  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  16176666 aggtaagggggataattctattctactaaataagctataatctactttttc 16176616  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 464
Target Start/End: Original strand, 17300779 - 17300883
Alignment:
Q  360 ttagtgaaaatgatgatgttgttattaattgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaacttga 459  Q
    |||||||||||||| ||||||||  ||| |||||||||||||| ||||||  || | ||||| |||||||||| ||||||||||||||||||||| ||||    
T  17300779 ttagtgaaaatgataatgttgttgataaatgatgaattcatgatttatgtaataagaatgttgttgggtatatgttgttgatgagaattcatgaatttga 17300878  T
Q  460 tgatg 464  Q
     ||||    
T  17300879 agatg 17300883  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 17287905 - 17288003
Alignment:
Q  361 tagtgaaaatgatgatgttgttattaattgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaacttga 459  Q
    ||||||||||||||||||||||  ||| |||||||||||||| ||||||  || | ||||| ||  ||| || ||||||||||||||||||||| ||||    
T  17287905 tagtgaaaatgatgatgttgttgataaatgatgaattcatgatttatgtaataagaatgttgttaagtacatcttgttgatgagaattcatgaatttga 17288003  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 23341328 - 23341391
Alignment:
Q  127 acaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||||||||||||||  ||  ||| ||| ||||||||||||||||||||||||||||||||||    
T  23341328 acaaggtaagggggatacattctttc-acttaataagctataatctagtttttcacttatgggtc 23341391  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 25559160 - 25559224
Alignment:
Q  127 acaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||||||||||||||| ||| || ||   ||||||||||||||| ||||||||||||||||||    
T  25559160 acaaggtaagggggataggtttgttttatctaataagctataatcttgtttttcacttatgggtc 25559224  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 23341537 - 23341599
Alignment:
Q  296 tgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaa 358  Q
    ||||| |||||||||||||||| | || |||||| ||||||||| ||||||||| | ||||||    
T  23341537 tgttggtgcttaattttcattgattatttgtgtttaagtgattattttgagaatctagcttaa 23341599  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Complemental strand, 26059973 - 26059867
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatg 374  Q
    ||||| |||||||||| ||| ||||||||| | | |||||||||||| || |||| |  || ||| ||||||||||| |||||| |  ||||| ||||||    
T  26059973 tgaaagttgttgaaaacttggtgttgatgcatgaatttcattgttgacatatgttaagttgtttagtttgagaatttagcttaaatcggtgaagatgatg 26059874  T
Q  375 atgttgt 381  Q
    | |||||    
T  26059873 aagttgt 26059867  T

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Target: scaffold0171 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 454
Target Start/End: Complemental strand, 4750 - 4567
Alignment:
Q  271 tatatgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaat 370  Q
    |||||| || ||||| |||| ||||||| ||||||||| ||||||| ||||||| || |    || ||||||||||||| | |||||| || ||||||||    
T  4750 tatatggaatttgttaaaaacttgttgtcgatgcttaaatttcattattgatatatgatatgttggttactttgagaatatagcttaaattggtgaaaat 4651  T
Q  371 gatgatgttgtt-attaattgatgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaa 454  Q
    |||||||||||| ||||| |  ||||||||||| |||| ||||||| ||||  ||||||| || ||  || ||||||||||||||    
T  4650 gatgatgttgttgattaa-tattgaattcatgatttatatgctatgaatgtggttgggtaaatgtttgtgttgagaattcatgaa 4567  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 21738133 - 21738220
Alignment:
Q  295 ttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatgatgttgtt 382  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||||   |||| ||||| ||  |||||||||||||||||||    
T  21738133 ttgttggtgcttaatcttcattgttgatatttgttgaagtgattactttgaagttttgacttaaattgatgaaaatgatgatgttgtt 21738220  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 21737931 - 21738025
Alignment:
Q  93 aagattcttggaggttagcttaagcttaatgattacaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatg 187  Q
    ||||||||||||  ||||| ||||||||| ||| ||||||||| |||||||  |||  |||||||||||||||||||| |  |||||||||||||    
T  21737931 aagattcttggaaattagcctaagcttaaggataacaaggtaaaggggatatgtttgctctactaaataagctataattttctttttcacttatg 21738025  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 22785119 - 22785191
Alignment:
Q  363 gtgaaaatgatgatgttgttattaatt---gatgaattcatgaattatgtgctatggatgtttttgggtatat 432  Q
    |||||||||||||||||||| || |||   |||||||||||||||||||||||||| ||||| ||||||||||    
T  22785119 gtgaaaatgatgatgttgttgttgattaatgatgaattcatgaattatgtgctatgaatgttgttgggtatat 22785191  T

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Target: scaffold2087 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold2087
Description:

Target: scaffold2087; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 454
Target Start/End: Original strand, 878 - 1039
Alignment:
Q  295 ttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaaatgatgatgttgttattaat---tga 391  Q
    |||||||| ||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||  |  ||||||| ||| | ||||  || ||   |||    
T  878 ttgttgatcctttattttcattgttgatatatcttgaagtgaatactttgagaatttggcttaaaatgatgaaaataatgttcttgtggttgattgatga 977  T
Q  392 tgaattcatgaattatgtgctatggatgtttttgggtatattttgttgatgagaattcatgaa 454  Q
    ||||||||||  |||| ||||||| ||||| |||| ||||| ||| | |||| ||||||||||    
T  978 tgaattcatg-gttatatgctatgaatgttgttggttatatgttggtaatgataattcatgaa 1039  T

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Target: scaffold2087; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 713 - 776
Alignment:
Q  128 caaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| || |||||||||||||||||    
T  713 caaggtaagggggatatgtttgttctactaaataagctataatataatttttcacttatgggtc 776  T

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Target: scaffold0064 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 6219 - 6280
Alignment:
Q  127 acaaggtaagggggatagttttattctactaaataagctataatctagtttttcacttatgggtc 191  Q
    |||||||||||||| ||| |||| | || ||||||||||||||||   |||||||||||||||||    
T  6219 acaaggtaagggggttaggtttactttaataaataagctataatc---tttttcacttatgggtc 6280  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 14558 - 14651
Alignment:
Q  275 tgaaaattgttgaaaatttgttgttgatgcttaattttcattgttgatatgtgttgaagtgattactttgagaatttggcttaacttagtgaaa 368  Q
    |||||| ||||||||| ||||||||||||| | |  |||||||||||||| || | |  || |||||||||||||||  ||||| || ||||||    
T  14558 tgaaaagtgttgaaaaattgttgttgatgcatgacattcattgttgatatatgctaacttgtttactttgagaatttaacttaaattggtgaaa 14651  T

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