View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_90 (Length: 228)
Name: NF0688_low_90
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 40188106 - 40188255
Alignment:
| Q |
1 |
tttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagatat |
100 |
Q |
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| T |
40188106 |
tttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagatat |
40188205 |
T |
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| Q |
101 |
atttcattacattgttggttagatacttagatatggtatgattagtatat |
150 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40188206 |
atttcattacattgtttgttagatacttagatatggtatgattagtatat |
40188255 |
T |
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