View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0689_high_11 (Length: 285)
Name: NF0689_high_11
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0689_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 5893514 - 5893335
Alignment:
| Q |
59 |
catcagcatgttcatgagtcaaaataatctgcaactcaaccaaagaactagttttttattctcaaagactgaaaatttctggtcaatccaaatttcaagg |
158 |
Q |
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| T |
5893514 |
catcagcatgttcatgagtcaaaataatctgcaactcaaccaaataactagttttt-attctcaaagactgaaaatttctggtcaattcaaatttcaagg |
5893416 |
T |
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| Q |
159 |
aacataccgtagacaaaaggaagaaaaactaggctaaaaacaaattgtagtcaatccatgttcttgaatatcatgtttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893415 |
aacataccgtagacaaaaggaagaaaaactaggctaaaaacaaattgtagtcaatccatgttcttgaatatcatgtttcat |
5893335 |
T |
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