View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0689_high_13 (Length: 267)
Name: NF0689_high_13
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0689_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 47967212 - 47967412
Alignment:
| Q |
58 |
attgaatcagattgaagaatatgatgtcaattgcatcatctttgttttctat--tcagagataatccaaaacctaatagaattttaatatgcatgaatgt |
155 |
Q |
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| T |
47967212 |
attgaatcggattgaagaatatgatgtcaattgcatcatctttgttttctatattcagagataatccaaaacctaatagaattttaatatgcatgaacgt |
47967311 |
T |
|
| Q |
156 |
tgttgaatgaaatcatgaatcatgtgtcgatgaattacatgattcctctaattagccaattcttagaagttgaaggcgtataagcagctttgttcgttca |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47967312 |
tgttgaatgaaatcatgaatcatgtgtcgatgaattacatgattcctctaattagccaattcttagaagttgaaggcgtataagcagctttgttcgttca |
47967411 |
T |
|
| Q |
256 |
t |
256 |
Q |
| |
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| |
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| T |
47967412 |
t |
47967412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 2479865 - 2479646
Alignment:
| Q |
30 |
atattatctcagaaaaaaccannnnnnnattgaatcagattgaagaatatgatgtcaattgcatcatctttgttttctattcagagataatccaaaacct |
129 |
Q |
| |
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| T |
2479865 |
atattatctcagaaaaaaccatttttttattgaatcggattgaagaatatgatatcaattgcatcatctttgttttctattcagagataatccaaaacct |
2479766 |
T |
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| Q |
130 |
aatagaattttaatatgcatgaatgttgttgaatgaaatcatgaatcatgtgtcgatgaattacatgattcctctaattagccaattcttagaagttgaa |
229 |
Q |
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| T |
2479765 |
aatagaattttaatatgcataaacgttgttgaatgaaatcatgaatcatg-------gaattacatgattcctctaattagccaattcttagaagttgaa |
2479673 |
T |
|
| Q |
230 |
ggcgtataagcagctttgttcgttcat |
256 |
Q |
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|| |||||||||||||| ||||||||| |
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| T |
2479672 |
ggtgtataagcagctttattcgttcat |
2479646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 27109958 - 27110177
Alignment:
| Q |
30 |
atattatctcagaaaaaaccannnnnnnattgaatcagattgaagaatatgatgtcaattgcatcatctttgttttctattcagagataatccaaaacct |
129 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27109958 |
atattatctcagaaaaaaccatttttttattgaatcggattgaagaatatgatatcaattgcatcatctttgttttctattcagagataatccaaaacct |
27110057 |
T |
|
| Q |
130 |
aatagaattttaatatgcatgaatgttgttgaatgaaatcatgaatcatgtgtcgatgaattacatgattcctctaattagccaattcttagaagttgaa |
229 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27110058 |
aatagaattttaatatgcataaacgttgttgaatgaaatcatgaatcatg-------gaattacatgattcctctaattagccaattcttagaagttgaa |
27110150 |
T |
|
| Q |
230 |
ggcgtataagcagctttgttcgttcat |
256 |
Q |
| |
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|| |||||||||||||| ||||||||| |
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|
| T |
27110151 |
ggtgtataagcagctttattcgttcat |
27110177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 44480817 - 44481017
Alignment:
| Q |
58 |
attgaatcagattgaagaatatgatgtcaattgcatcatctttgttttctattca--gagataatccaaaacctaatagaattttaatat---------g |
146 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
44480817 |
attgaatcggattgaagaatatgatgtcaattgcatcat-tttgtattctattcatagagataatccaaaacctaatagaattttaatatttttaatatg |
44480915 |
T |
|
| Q |
147 |
catgaat-gttgttgaatgaaatcatgaatcatgtgtcgatgaattacatgattcctctaattagccaattcttagaagttgaaggcgtataagcagctt |
245 |
Q |
| |
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|| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
44480916 |
caagaaccgttgttgaatgaaatcgtgaatcatgtgtcgatgaattacgtgattcctctaattag-caattcttagaagttgaaggtgtataaatagctt |
44481014 |
T |
|
| Q |
246 |
tgt |
248 |
Q |
| |
|
||| |
|
|
| T |
44481015 |
tgt |
44481017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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