View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0689_high_15 (Length: 263)

Name: NF0689_high_15
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0689_high_15
NF0689_high_15
[»] chr8 (25 HSPs)
chr8 (25-171)||(7935619-7935767)
chr8 (174-234)||(1554353-1554413)
chr8 (175-234)||(10896217-10896276)
chr8 (175-234)||(18726619-18726678)
chr8 (174-233)||(25837924-25837983)
chr8 (169-234)||(32660927-32660992)
chr8 (174-234)||(12710657-12710717)
chr8 (174-234)||(16313506-16313566)
chr8 (166-234)||(26601929-26601997)
chr8 (174-234)||(35818423-35818483)
chr8 (174-234)||(37392545-37392605)
chr8 (174-234)||(38364093-38364153)
chr8 (181-234)||(3050021-3050074)
chr8 (174-234)||(26062156-26062216)
chr8 (174-234)||(38132736-38132796)
chr8 (174-234)||(41228713-41228773)
chr8 (176-234)||(42755879-42755937)
chr8 (179-234)||(7931251-7931306)
chr8 (175-234)||(18298124-18298183)
chr8 (175-234)||(40197076-40197135)
chr8 (177-216)||(8635664-8635703)
chr8 (174-230)||(7317389-7317445)
chr8 (177-228)||(5020492-5020543)
chr8 (176-225)||(33444627-33444676)
chr8 (177-217)||(31117546-31117586)
[»] scaffold0006 (1 HSPs)
scaffold0006 (174-234)||(201937-201997)
[»] chr7 (35 HSPs)
chr7 (174-234)||(9814217-9814277)
chr7 (174-234)||(33378854-33378914)
chr7 (174-234)||(48160590-48160650)
chr7 (174-234)||(48314134-48314194)
chr7 (174-234)||(8419588-8419648)
chr7 (174-234)||(11330005-11330065)
chr7 (174-234)||(27213854-27213914)
chr7 (174-234)||(27248305-27248365)
chr7 (174-234)||(39554195-39554255)
chr7 (174-234)||(45045638-45045698)
chr7 (178-234)||(48341374-48341430)
chr7 (175-234)||(38544206-38544265)
chr7 (175-234)||(40212901-40212960)
chr7 (176-234)||(43949257-43949315)
chr7 (174-234)||(9946989-9947049)
chr7 (174-234)||(16825353-16825413)
chr7 (174-234)||(25924636-25924696)
chr7 (174-234)||(27419223-27419283)
chr7 (174-234)||(35488188-35488248)
chr7 (179-234)||(38396370-38396425)
chr7 (175-234)||(44566057-44566116)
chr7 (177-235)||(44820265-44820323)
chr7 (176-234)||(45265049-45265107)
chr7 (174-234)||(25098081-25098141)
chr7 (174-234)||(28904185-28904245)
chr7 (176-234)||(41632365-41632423)
chr7 (179-233)||(45448955-45449009)
chr7 (176-230)||(45723223-45723277)
chr7 (176-234)||(34930466-34930525)
chr7 (174-226)||(41684021-41684073)
chr7 (174-225)||(11000724-11000775)
chr7 (174-208)||(25045617-25045651)
chr7 (175-221)||(45440933-45440979)
chr7 (176-221)||(30685993-30686038)
chr7 (174-226)||(18824166-18824218)
[»] chr6 (11 HSPs)
chr6 (174-234)||(2657712-2657772)
chr6 (174-234)||(7053569-7053629)
chr6 (174-234)||(8029345-8029405)
chr6 (175-234)||(1317030-1317089)
chr6 (174-230)||(14171029-14171085)
chr6 (178-234)||(18897933-18897989)
chr6 (182-230)||(16968941-16968989)
chr6 (175-210)||(10246222-10246257)
chr6 (174-222)||(6705764-6705812)
chr6 (174-234)||(7344082-7344142)
chr6 (174-226)||(3869525-3869577)
[»] chr5 (20 HSPs)
chr5 (174-234)||(4765559-4765619)
chr5 (174-234)||(12970529-12970589)
chr5 (174-234)||(19065504-19065564)
chr5 (174-234)||(555705-555765)
chr5 (174-234)||(22935911-22935971)
chr5 (174-234)||(28602567-28602627)
chr5 (177-234)||(32535949-32536006)
chr5 (174-234)||(14206820-14206880)
chr5 (174-234)||(18412221-18412281)
chr5 (174-234)||(29543014-29543074)
chr5 (178-234)||(11855658-11855714)
chr5 (179-234)||(6091727-6091782)
chr5 (175-234)||(36703886-36703945)
chr5 (181-233)||(8406907-8406959)
chr5 (174-234)||(27481369-27481429)
chr5 (196-234)||(8646412-8646450)
chr5 (174-226)||(42012178-42012230)
chr5 (176-226)||(6930664-6930714)
chr5 (177-230)||(20962606-20962659)
chr5 (177-226)||(26637045-26637094)
[»] chr4 (35 HSPs)
chr4 (174-234)||(45747795-45747855)
chr4 (169-234)||(25916029-25916094)
chr4 (174-234)||(6279920-6279980)
chr4 (174-234)||(25932457-25932517)
chr4 (174-234)||(27555426-27555486)
chr4 (174-234)||(39730292-39730352)
chr4 (174-234)||(40435916-40435976)
chr4 (174-234)||(48879341-48879401)
chr4 (174-234)||(55967999-55968059)
chr4 (175-234)||(27762899-27762958)
chr4 (175-234)||(32953539-32953598)
chr4 (175-234)||(34049597-34049656)
chr4 (175-234)||(48518891-48518950)
chr4 (174-226)||(23686811-23686863)
chr4 (174-234)||(35999702-35999762)
chr4 (174-234)||(39498841-39498901)
chr4 (174-234)||(39502180-39502240)
chr4 (174-234)||(39835306-39835366)
chr4 (174-234)||(41859046-41859106)
chr4 (179-234)||(27942759-27942814)
chr4 (179-234)||(34237424-34237479)
chr4 (177-234)||(18931769-18931826)
chr4 (174-230)||(936146-936202)
chr4 (174-234)||(18405233-18405293)
chr4 (174-234)||(42773964-42774024)
chr4 (174-234)||(43723280-43723340)
chr4 (175-234)||(13229989-13230048)
chr4 (176-234)||(47670378-47670436)
chr4 (177-234)||(41744222-41744279)
chr4 (174-230)||(30415922-30415978)
chr4 (174-234)||(45596284-45596344)
chr4 (187-234)||(8322261-8322308)
chr4 (174-234)||(50672907-50672964)
chr4 (180-234)||(10400810-10400864)
chr4 (174-231)||(36858377-36858434)
[»] chr3 (23 HSPs)
chr3 (174-234)||(24574587-24574647)
chr3 (174-234)||(26849034-26849094)
chr3 (174-234)||(40908277-40908337)
chr3 (175-234)||(9320448-9320507)
chr3 (174-234)||(8476307-8476367)
chr3 (174-234)||(11239119-11239179)
chr3 (174-234)||(44952320-44952380)
chr3 (175-234)||(6231501-6231560)
chr3 (175-234)||(28124436-28124495)
chr3 (174-234)||(20297805-20297865)
chr3 (179-234)||(33217917-33217972)
chr3 (175-234)||(47114857-47114916)
chr3 (177-234)||(1099210-1099267)
chr3 (174-234)||(20414464-20414524)
chr3 (174-234)||(43715307-43715367)
chr3 (174-234)||(31435922-31435982)
chr3 (178-234)||(48339760-48339816)
chr3 (174-230)||(43132156-43132212)
chr3 (183-230)||(53165733-53165780)
chr3 (194-234)||(31611004-31611044)
chr3 (174-226)||(45826796-45826848)
chr3 (174-226)||(2565459-2565511)
chr3 (174-230)||(55435391-55435447)
[»] chr2 (34 HSPs)
chr2 (174-234)||(346344-346404)
chr2 (174-234)||(21737399-21737459)
chr2 (174-234)||(39995130-39995190)
chr2 (174-234)||(4559571-4559631)
chr2 (174-234)||(6171803-6171863)
chr2 (174-234)||(11071617-11071677)
chr2 (174-234)||(34356699-34356759)
chr2 (174-234)||(37533964-37534024)
chr2 (174-234)||(42674660-42674720)
chr2 (175-234)||(9733846-9733905)
chr2 (176-234)||(41750541-41750599)
chr2 (177-234)||(2050878-2050935)
chr2 (177-234)||(37192534-37192591)
chr2 (174-234)||(5770109-5770169)
chr2 (174-234)||(14777497-14777557)
chr2 (174-234)||(27357962-27358022)
chr2 (174-234)||(45409262-45409322)
chr2 (174-231)||(41729129-41729186)
chr2 (174-234)||(2521687-2521747)
chr2 (174-234)||(17965995-17966055)
chr2 (174-230)||(20426482-20426538)
chr2 (174-226)||(40950858-40950910)
chr2 (179-234)||(638605-638660)
chr2 (179-230)||(28311701-28311752)
chr2 (180-234)||(26310281-26310335)
chr2 (179-229)||(37233446-37233496)
chr2 (179-226)||(14832830-14832877)
chr2 (178-230)||(13760961-13761013)
chr2 (174-221)||(40570045-40570092)
chr2 (177-226)||(24499460-24499509)
chr2 (174-230)||(6571703-6571759)
chr2 (175-226)||(1988331-1988382)
chr2 (174-226)||(5002836-5002888)
chr2 (174-230)||(45694204-45694260)
[»] chr1 (36 HSPs)
chr1 (174-234)||(2430509-2430569)
chr1 (174-234)||(3572564-3572624)
chr1 (177-234)||(9831872-9831929)
chr1 (174-234)||(1597341-1597401)
chr1 (174-234)||(2632865-2632925)
chr1 (174-234)||(5806290-5806350)
chr1 (174-234)||(6978783-6978843)
chr1 (174-234)||(9115850-9115910)
chr1 (178-234)||(36361795-36361851)
chr1 (174-234)||(39329621-39329681)
chr1 (174-234)||(46666721-46666781)
chr1 (174-234)||(52630786-52630846)
chr1 (175-234)||(39930470-39930529)
chr1 (171-234)||(49822913-49822976)
chr1 (176-234)||(25789776-25789834)
chr1 (174-234)||(4683373-4683433)
chr1 (174-226)||(5518503-5518555)
chr1 (174-234)||(6911506-6911566)
chr1 (174-234)||(8332027-8332087)
chr1 (174-234)||(35187469-35187529)
chr1 (174-234)||(38964678-38964738)
chr1 (174-226)||(47037478-47037530)
chr1 (174-233)||(12190176-12190235)
chr1 (175-234)||(14788736-14788795)
chr1 (175-234)||(20260086-20260145)
chr1 (174-234)||(32202330-32202390)
chr1 (178-234)||(51445083-51445139)
chr1 (177-234)||(32824935-32824992)
chr1 (175-230)||(1007764-1007819)
chr1 (174-234)||(48916021-48916081)
chr1 (177-234)||(50190767-50190824)
chr1 (174-230)||(52699465-52699521)
chr1 (174-209)||(29091704-29091739)
chr1 (184-234)||(37436630-37436680)
chr1 (176-221)||(13931885-13931930)
chr1 (178-226)||(31806759-31806807)
[»] scaffold0189 (1 HSPs)
scaffold0189 (180-234)||(28957-29011)
[»] scaffold0702 (1 HSPs)
scaffold0702 (174-221)||(3564-3611)
[»] scaffold0662 (1 HSPs)
scaffold0662 (174-221)||(4493-4540)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 7935767 - 7935619
Alignment:
Q  25 tctctgtcgaatatat--gtgacaatgttgttaaattttatttgtaacaaaatataagtaaaatggtttaaaatgtcaaatgtatttagtctaaaattct 122  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7935767 tctctgtcgaatatatatgtgacaatgttgttaaattttatttgtaacaaaatataagtaaaatgatttaaaatgtcaaatgtatttagtctaaaattct 7935668  T
Q  123 agctaaaacacttcctttttgaatccttgtacttatattttttatagat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7935667 agctaaaacacttcctttttgaatccttgtacttatattttttatagat 7935619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1554353 - 1554413
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1554353 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 1554413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 10896217 - 10896276
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10896217 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtat 10896276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 18726619 - 18726678
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18726619 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 18726678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 25837983 - 25837924
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgta 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25837983 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgta 25837924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 32660927 - 32660992
Alignment:
Q  169 gattgagggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  32660927 gattaagggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtat 32660992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 12710717 - 12710657
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  12710717 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 12710657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 16313506 - 16313566
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16313506 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtat 16313566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 26601929 - 26601997
Alignment:
Q  166 atagattgagggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  26601929 atagattaaggatgtgtttgtttcaaattataattgttgattcccgggaataaaatgataggaatgtat 26601997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 35818423 - 35818483
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  35818423 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 35818483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 37392545 - 37392605
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37392545 agggtgtatttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 37392605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 38364153 - 38364093
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  38364153 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 38364093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 3050074 - 3050021
Alignment:
Q  181 gtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 3050021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 26062216 - 26062156
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  26062216 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtat 26062156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 38132736 - 38132796
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  38132736 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtat 38132796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 41228713 - 41228773
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  41228713 agggtgtgtttgtttcaagttataattgttaattcccgggaataaaatggtaggaatgtat 41228773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 42755937 - 42755879
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  42755937 ggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtat 42755879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 7931306 - 7931251
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  7931306 gtgtttgtttcaagttataattgttgattcctgggaataaaatgatagaaatgtat 7931251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 18298183 - 18298124
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  18298183 gggtttgtttgtttcaagttataatttttgattctcgggaataaaatgataggaatgtat 18298124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 40197076 - 40197135
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  40197076 gggtatgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtat 40197135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 8635703 - 8635664
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8635703 gtgtgtttgtttcaagttataattgttgattcccaggaat 8635664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 7317445 - 7317389
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||||||||| |||||||||  ||  |||||||||||||||||    
T  7317445 agggtgtgtttgtttcaagttatatttgttgattttcaaaaataaaatgataggaat 7317389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 5020492 - 5020543
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagga 228  Q
    ||||||||||||||||||||| ||||||||||   |||||||||||||||||    
T  5020492 gtgtgtttgtttcaagttatatttgttgattcatgggaataaaatgatagga 5020543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 33444627 - 33444676
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgata 225  Q
    |||||||||||||||||||||| |||||||||||   |||||||||||||    
T  33444627 ggtgtgtttgtttcaagttatatttgttgattcctgagaataaaatgata 33444676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 31117546 - 31117586
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaata 217  Q
    ||||||||||||||||||||| |||||||||| ||| ||||    
T  31117546 gtgtgtttgtttcaagttatatttgttgattctcagaaata 31117586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 201997 - 201937
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  201997 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 201937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 9814217 - 9814277
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9814217 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 9814277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 33378914 - 33378854
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33378914 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 33378854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 48160590 - 48160650
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48160590 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 48160650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 48314194 - 48314134
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48314194 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 48314134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 8419588 - 8419648
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8419588 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 8419648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 11330065 - 11330005
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  11330065 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 11330005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 27213854 - 27213914
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27213854 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 27213914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 27248365 - 27248305
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27248365 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 27248305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 39554255 - 39554195
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39554255 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 39554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 45045698 - 45045638
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  45045698 agggtgtgtttgttttaagttataattgttgattcccgggaataaaatgataggaatgtat 45045638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 48341430 - 48341374
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 48341374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 38544265 - 38544206
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  38544265 gggtgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtat 38544206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 40212960 - 40212901
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  40212960 gggtgtgtttgtttcaagttataattgttgattcgcgggaataaaatgataggaatgtat 40212901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 43949315 - 43949257
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  43949315 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 43949257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 9946989 - 9947049
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  9946989 agggtgtgtttgtttaaagttataatttttgattcccgggaataaaatgataggaatgtat 9947049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 16825353 - 16825413
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  16825353 agggtgtgtttgtttcaagttataattgttaattcctaggaataaaatgatagaaatgtat 16825413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 25924636 - 25924696
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25924636 agggtatgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 25924696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 27419223 - 27419283
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  27419223 agggtgtgtttgtttcaagttataattgctgattcccgggaataaaatgatagaaatgtat 27419283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 35488188 - 35488248
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  35488188 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtat 35488248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 38396370 - 38396425
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  38396370 gtgtttgttccaagttataattgttgattcccgggaataaaatgataggaatgtat 38396425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 44566116 - 44566057
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||    
T  44566116 gggtgtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtat 44566057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 44820323 - 44820265
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtatt 235  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  44820323 gtgtgtttgtttcaagttataattgttgattttcaggaataaaatgatagaaatgtatt 44820265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 45265049 - 45265107
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  45265049 ggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgattggaatgtat 45265107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 25098141 - 25098081
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  25098141 agggtgtgtttgtttcaagttataatttttgattttcgggaataaaatgataggaatgtat 25098081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 28904185 - 28904245
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||||    
T  28904185 agggtgtgtttgttttaagttataattgttgattcccgagaataaaatgatagaaatgtat 28904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 41632365 - 41632423
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||    
T  41632365 ggtgtgtttgtttcaagttataattgttgattcctgagaataaaatgatagaaatgtat 41632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 45449009 - 45448955
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgta 233  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  45449009 gtgtttgtttcaagttataatttttgattctcgggaataaaatgataggaatgta 45448955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 45723277 - 45723223
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  45723277 ggtgtgtttgtttcaagttatatttgttgattcccgagaataaaatgataggaat 45723223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 34930466 - 34930525
Alignment:
Q  176 ggtgtgtttgtttcaa-gttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||    
T  34930466 ggtgtgtttgtttcaaagttataattgttgattcctgggaataaaatgatagaaatgtat 34930525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 41684021 - 41684073
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||||||||||||| |||||||||||   |||||| |||||||    
T  41684021 agggtgtgtttgtttcaagttatatttgttgattcctgagaataatatgatag 41684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 11000775 - 11000724
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgata 225  Q
    ||||||||||||||||||||||||  ||||||||||  | ||||||||||||    
T  11000775 agggtgtgtttgtttcaagttatatatgttgattcctggaaataaaatgata 11000724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 25045617 - 25045651
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattc 208  Q
    |||||||||||||||||||||||| ||||||||||    
T  25045617 agggtgtgtttgtttcaagttatatttgttgattc 25045651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 45440979 - 45440933
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    |||||||||||||||||||||||||||| |||||   ||||||||||    
T  45440979 gggtgtgtttgtttcaagttataattgtagattcttgggaataaaat 45440933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 30685993 - 30686038
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    ||||||||||||||||||||||||||| |||||   ||||||||||    
T  30685993 ggtgtgtttgtttcaagttataattgtagattcgttggaataaaat 30686038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 18824218 - 18824166
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||| || |||||||||    |||||||||||||||    
T  18824218 agggtgtgtttgtttcaagttgtatttgttgatttttgggaataaaatgatag 18824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2657772 - 2657712
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2657772 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 2657712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 7053569 - 7053629
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7053569 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 7053629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 8029405 - 8029345
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  8029405 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 8029345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 1317089 - 1317030
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  1317089 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 1317030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 14171085 - 14171029
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  14171085 agggtgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaat 14171029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 18897989 - 18897933
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcccggaaataaagtgatagaaatgtat 18897933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 16968989 - 16968941
Alignment:
Q  182 tttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||    
T  16968989 tttgtttcaagttataattgttgattcctgagaataaaatgataggaat 16968941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 10246222 - 10246257
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattccc 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  10246222 gggtgtgtttgtttcaagttataattgttgattccc 10246257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 6705764 - 6705812
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatg 222  Q
    |||||||||||||||||||||||| ||||||||||   |||||||||||    
T  6705764 agggtgtgtttgtttcaagttatatttgttgattcattggaataaaatg 6705812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 7344082 - 7344142
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||| ||||||| ||||||||||  ||| ||  ||||||||||||||||||||||    
T  7344082 agggtgtgttcgtttcaaattataattgtaaatttccgagaataaaatgataggaatgtat 7344142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 3869577 - 3869525
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||||||||||||  |||| |||| |  |||||||||||||||    
T  3869577 agggtgtgtttgtttcaagttatttttgtagatttctgggaataaaatgatag 3869525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 4765559 - 4765619
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4765559 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 4765619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 12970529 - 12970589
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12970529 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 12970589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 19065504 - 19065564
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19065504 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 19065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 555705 - 555765
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  555705 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 555765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 22935911 - 22935971
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  22935911 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 22935971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 28602627 - 28602567
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  28602627 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 28602567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 32536006 - 32535949
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  32536006 gtgtgtttgttttaagttataattgttgattcccaggaataaaatgatagaaatgtat 32535949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 14206820 - 14206880
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  14206820 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgatagaaatgtat 14206880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 18412281 - 18412221
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  18412281 agggtgtgtttgtttcaagttataattattgattcctgggaataaaatgataggaatgtat 18412221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 29543014 - 29543074
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  29543014 agggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtat 29543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 11855658 - 11855714
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  11855658 tgtgtttgtttcaagttataattgttgattcctgagaataaaatgataggaatgtat 11855714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 6091782 - 6091727
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtat 6091727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 36703945 - 36703886
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||| |||||||    
T  36703945 gggtgtgtttgtttcaagttataattgttgattatcgggaataaaatgatagaaatgtat 36703886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8406959 - 8406907
Alignment:
Q  181 gtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgta 233  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||||    
T  8406959 gtttgtttcaagttataattgttgattttcgagaataaaatgataggaatgta 8406907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 27481429 - 27481369
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||| ||||||    | |||||||||||||||||||||    
T  27481429 agggtgtgtttgtttcaagttataatttttgatttttggaaataaaatgataggaatgtat 27481369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 8646412 - 8646450
Alignment:
Q  196 taattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  8646412 taattgttgattcccgggaataaaatgataggaatgtat 8646450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 42012178 - 42012230
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||| ||| |||| |||||||||| | |||||||||||||||    
T  42012178 agggtgtgtttgtttgaagctatatttgttgattctcgggaataaaatgatag 42012230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 6930714 - 6930664
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||| |||||||||||| |||||||||||   ||||||||||||||    
T  6930714 ggtgtgtttatttcaagttatatttgttgattcctgagaataaaatgatag 6930664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 20962659 - 20962606
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||||| | || |||||   |||||||||||||||||||    
T  20962659 gtgtgtttgtttcaagttatattcgtagattcttgggaataaaatgataggaat 20962606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 26637045 - 26637094
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||| |||||||||    |||||||||||||||    
T  26637045 gtgtgtttgtttcaagttatatttgttgattaatgggaataaaatgatag 26637094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 45747795 - 45747855
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45747795 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 45747855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 25916029 - 25916094
Alignment:
Q  169 gattgagggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  25916029 gattaagggtgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 25916094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 6279920 - 6279980
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6279920 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatatgaatgtat 6279980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 25932517 - 25932457
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25932517 agggtgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtat 25932457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 27555486 - 27555426
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  27555486 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtat 27555426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 39730292 - 39730352
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  39730292 agggtgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 39730352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 40435976 - 40435916
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  40435976 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 40435916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 48879401 - 48879341
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  48879401 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 48879341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 55967999 - 55968059
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  55967999 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 55968059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 27762899 - 27762958
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27762899 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 27762958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 32953598 - 32953539
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32953598 gggtgtgtttgtctcaagttataattgttgattcccaggaacaaaatgataggaatgtat 32953539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 34049597 - 34049656
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  34049597 gggtgtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtat 34049656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 48518891 - 48518950
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  48518891 gggtgtgtttgtttcaagttataatttttgattcccgggaataaaatgataggaatgtat 48518950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 23686863 - 23686811
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23686863 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatag 23686811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 35999762 - 35999702
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  35999762 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtat 35999702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 39498901 - 39498841
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  39498901 agggtgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtat 39498841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 39502240 - 39502180
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  39502240 agggtgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtat 39502180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 39835306 - 39835366
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  39835306 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtat 39835366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 41859046 - 41859106
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  41859046 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtat 41859106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 27942814 - 27942759
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  27942814 gtgtttgtttcaagttataattgttgattcccggaaataaaatgataggaatgtat 27942759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 34237424 - 34237479
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34237424 gtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 34237479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 18931826 - 18931769
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  18931826 gtgtgtttgtttcaagttataattgttgatttctgggaataaaatgataggaatgtat 18931769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 936202 - 936146
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  936202 agggtgtgtttgtttcaagttataattgttgattcccgagaataaaatgattggaat 936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 18405233 - 18405293
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||    
T  18405233 agggtgtgtttgtttcaagttataattgttgattcccgagaataaaattatagaaatgtat 18405293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 42774024 - 42773964
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  42774024 agggtgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtat 42773964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 43723340 - 43723280
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||    
T  43723340 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtat 43723280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 13229989 - 13230048
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||    
T  13229989 gggtgtgtttgtttcaagttataattttttattcccgggaataaaatgatagaaatgtat 13230048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 47670436 - 47670378
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||    
T  47670436 ggtgtgtttgtttcaagttataattgttgattcctggaaataaaatgatagaaatgtat 47670378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 41744222 - 41744279
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||    
T  41744222 gtgtgtttatttcaagttataattgttgatttccgggaataaaatgatagaaatgtat 41744279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 30415978 - 30415922
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  30415978 agggtgtgtttgtttcaagttatatttgttgattcccgataataaaatgataggaat 30415922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 45596344 - 45596284
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||| |||||||||||||||||||||||||||  | ||||||||||||||| |||||||    
T  45596344 agggtgcgtttgtttcaagttataattgttgattttcgggaataaaatgatagaaatgtat 45596284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 8322308 - 8322261
Alignment:
Q  187 ttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||    
T  8322308 ttcaagttataattgttgattcctgggaataaaatgatagaaatgtat 8322261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 50672907 - 50672964
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||| ||||||  ||||||||||||  |||||||||||||||||||||||    
T  50672907 agggtgtgtttgttttaagtta--attgttgattccg-ggaataaaatgataggaatgtat 50672964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 10400810 - 10400864
Alignment:
Q  180 tgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||| |||||||||    ||||||||||||||| |||||||    
T  10400810 tgtttgtttcaagttatatttgttgatttttgggaataaaatgatagaaatgtat 10400864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 36858377 - 36858434
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatg 231  Q
    |||||||||||||||||||||||| |  | |||||||| |||||||| ||||| ||||    
T  36858377 agggtgtgtttgtttcaagttatattcttagattcccaagaataaaaagatagaaatg 36858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 24574647 - 24574587
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24574647 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 24574587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 26849094 - 26849034
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26849094 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 26849034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 40908337 - 40908277
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40908337 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 40908277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 9320448 - 9320507
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9320448 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 9320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 8476307 - 8476367
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8476307 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 8476367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 11239119 - 11239179
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  11239119 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 11239179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 44952380 - 44952320
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  44952380 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 44952320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 6231501 - 6231560
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6231501 gggtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtat 6231560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 28124436 - 28124495
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  28124436 gggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgataggaatgtat 28124495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 20297865 - 20297805
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  20297865 agggtgtgtttgtttcaagttataattgttgattcccggaaataaaatgatagaaatgtat 20297805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 33217917 - 33217972
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  33217917 gtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtat 33217972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 47114857 - 47114916
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  47114857 gggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtat 47114916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 1099267 - 1099210
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  1099267 gtgtgtttgttttaagttataattgttgattcccgggaataaaatgatagaaatgtat 1099210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 20414464 - 20414524
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  20414464 agggtgtgtttgtttcaagttataattgttgatttctgggaataaaatgattggaatgtat 20414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 43715307 - 43715367
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||    
T  43715307 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtat 43715367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 31435922 - 31435982
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||| |||||||||||   |||||||||||||| |||||||    
T  31435922 agggtgtgtttgtttcaagttatatttgttgattcctgagaataaaatgatagaaatgtat 31435982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 48339760 - 48339816
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  48339760 tgtgtttgtttcaagttataattgttgatttccgggaataaaatgatataaatgtat 48339816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 43132156 - 43132212
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||||||||| |||||||||| |  ||||||||| ||||||||    
T  43132156 agggtgtgtttgtttcaagttatatttgttgattctcgagaataaaataataggaat 43132212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 53165733 - 53165780
Alignment:
Q  183 ttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||    
T  53165733 ttgtttcaagttatatttgttgattcccataaataaaatgataggaat 53165780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 31611004 - 31611044
Alignment:
Q  194 tataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  31611004 tataattgttgattcccgggaataaaatgattggaatgtat 31611044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 45826848 - 45826796
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||||||||||||  |||| ||||||  |||||||||||||||    
T  45826848 agggtgtgtttgtttcaagttatcgttgtagattccagggaataaaatgatag 45826796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 2565459 - 2565511
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||| |||| |||||||| ||||||||||  ||||||||||| ||||    
T  2565459 agggtgtgttcgttttaagttatatttgttgattcttaggaataaaataatag 2565511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 55435391 - 55435447
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||| |||||||||||||||  |||| ||| ||  |||||||||||||||||||    
T  55435391 agggtgtatttgtttcaagttatttttgtagatacctgggaataaaatgataggaat 55435447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 346344 - 346404
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  346344 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 346404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 21737399 - 21737459
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21737399 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 21737459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 39995130 - 39995190
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39995130 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 39995190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 4559631 - 4559571
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4559631 agggtgtgtttgtttcaagttataattgttgattcccaagaataaaatgattggaatgtat 4559571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 6171863 - 6171803
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6171863 agggtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtat 6171803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 11071677 - 11071617
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  11071677 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtat 11071617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 34356699 - 34356759
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34356699 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 34356759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 37534024 - 37533964
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  37534024 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtat 37533964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 42674660 - 42674720
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  42674660 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 42674720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 9733846 - 9733905
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9733846 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 9733905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 41750599 - 41750541
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  41750599 ggtgtgtttgtttcaagttataattgttgattcctaggaataaaatgatagaaatgtat 41750541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 2050935 - 2050878
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2050935 gtgtgtttgtttcaagttataattgttgattcccgagaataaaatgataggaatgtat 2050878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 37192591 - 37192534
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  37192591 gtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 37192534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 5770109 - 5770169
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  5770109 agggtatgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtat 5770169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 14777497 - 14777557
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  14777497 agggtgtgtttgtttcaatttataattgttgattcccgggaataaaatgattggaatgtat 14777557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 27357962 - 27358022
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||    
T  27357962 agggtgtgtttgtttcaagttatatttgttgattcccaggtataaaatgatagggatgtat 27358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 45409322 - 45409262
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  45409322 agggtgtgtttgtttcaagttatatttgttgattcccaagtataaaatgataggaatgtat 45409262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 41729129 - 41729186
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatg 231  Q
    ||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  41729129 agggtgtgtttgtttcaagttataattttttattcccgggaataaaatgataggaatg 41729186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2521747 - 2521687
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  2521747 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgattggaatgtat 2521687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 17966055 - 17965995
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||    
T  17966055 agggtgtgtttgtttcaagttataattgttgattcccgataataaaatgattggaatgtat 17965995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 20426482 - 20426538
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  20426482 agggtgtgtttgtttcaaattatatttgttgattcccgggaataaaatgataggaat 20426538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 40950858 - 40950910
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  40950858 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatag 40950910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 638660 - 638605
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||||    
T  638660 gtgtttgtttcaagttataattgttgatttccggaaataaaatgataggaatgtat 638605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 28311701 - 28311752
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  28311701 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaat 28311752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 26310335 - 26310281
Alignment:
Q  180 tgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  26310335 tgtttgtttaaagttataattgttgattcccgggaataaaatgatagaaatgtat 26310281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 37233496 - 37233446
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaa 229  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  37233496 gtgtttgtttcaagttatatttgttgattcccgggaataaaatgataggaa 37233446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 14832877 - 14832830
Alignment:
Q  179 gtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  14832877 gtgtttgtttcaagttatatttgttgattcctaggaataaaatgatag 14832830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 13761013 - 13760961
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||||||| ||||||  | |||||||||||||||||||    
T  13761013 tgtgtttgtttcaagttataattattgattttcgggaataaaatgataggaat 13760961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 40570092 - 40570045
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  40570092 agggtgtgtttgtttcaagttataattgtagattcctgggaataaaat 40570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 24499509 - 24499460
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||| ||||||||||  || |||||||||||||    
T  24499509 gtgtgtttgtttcaagttatatttgttgattcatagaaataaaatgatag 24499460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 6571759 - 6571703
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||| ||||||| |||||||| ||||||||| || | |||||||||||||||||    
T  6571759 agggtgtatttgtttaaagttatatttgttgatttccggaaataaaatgataggaat 6571703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 1988382 - 1988331
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||| |||||||| ||||||||| |  |||||||||||||||    
T  1988382 gggtgtgtttgtttgaagttatatttgttgatttctgggaataaaatgatag 1988331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 5002836 - 5002888
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||| ||||||||||||||||| |||| |||| | | ||||||||||||||    
T  5002836 agggtgcgtttgtttcaagttatatttgtagatttctaagaataaaatgatag 5002888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 45694260 - 45694204
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||| ||||||||||||||||| | || |||| |  |||||||||||||||||||    
T  45694260 agggtgcgtttgtttcaagttatattcgtagatttctgggaataaaatgataggaat 45694204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2430569 - 2430509
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2430569 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 2430509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 3572564 - 3572624
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3572564 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 3572624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 9831872 - 9831929
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9831872 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatagaaatgtat 9831929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1597341 - 1597401
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  1597341 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgataggaatgtat 1597401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2632925 - 2632865
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  2632925 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaataataggaatgtat 2632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 5806290 - 5806350
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5806290 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 5806350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 6978843 - 6978783
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  6978843 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 6978783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 9115910 - 9115850
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9115910 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 9115850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 36361851 - 36361795
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgataggaatgtat 36361795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 39329681 - 39329621
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  39329681 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 39329621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 46666781 - 46666721
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  46666781 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgattggaatgtat 46666721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 52630846 - 52630786
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  52630846 agggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgataggaatgtat 52630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 39930529 - 39930470
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39930529 gggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 39930470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 49822913 - 49822976
Alignment:
Q  171 ttgagggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  49822913 ttgagggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgatagaaatgtat 49822976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 25789834 - 25789776
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25789834 ggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 25789776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 4683373 - 4683433
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  4683373 agggtgtctttgtttcaatttataattgttgattcccagaaataaaatgataggaatgtat 4683433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 5518503 - 5518555
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5518503 agggtgtgtttgtttcaagttatatttgttgattcccaggaataaaatgatag 5518555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 6911566 - 6911506
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  6911566 agggtgtgtttgtttcaagttataattgttgattctcgggaataaaatgataagaatgtat 6911506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 8332087 - 8332027
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  8332087 agggtgtgtttgtttcaagttataattgttgatttccgggaataaaatgattggaatgtat 8332027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 35187529 - 35187469
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  35187529 agggtgtgtttttttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 35187469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 38964678 - 38964738
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  38964678 agggggtgtttgtttcaagttataattgttgattcccgggaataaaatgatagaaatgtat 38964738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 47037530 - 47037478
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47037530 agggtgtgtttgtttcaagttataattgttgattcccgggaataaaatgatag 47037478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 12190176 - 12190235
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgta 233  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  12190176 agggtgtgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgta 12190235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 14788795 - 14788736
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  14788795 gggtgtgtttgtttcaagttataatttttgattcccgggaataaaataataggaatgtat 14788736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 20260086 - 20260145
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  20260086 gggtgtgtttgtttcaagttataattgttgattcctgggaataaaatgattggaatgtat 20260145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 32202330 - 32202390
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||    
T  32202330 agggtgtgtttgtttcaagttataattgttgattcccgaaaataaaatgatagaaatgtat 32202390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 51445083 - 51445139
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcccgggaataaaatgatataaatgtat 51445139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 32824992 - 32824935
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||    
T  32824992 gtgtgtttgtttcaagttataattgttgatttccggaaataaaataataggaatgtat 32824935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 1007819 - 1007764
Alignment:
Q  175 gggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  1007819 gggtgtgtttgtttcaagttatatttgttgattcccgagaataaaatgatatgaat 1007764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 48916021 - 48916081
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||| |||||||||||| |||||||||||   |||||||||||||| |||||||    
T  48916021 agggtgtgtttatttcaagttatatttgttgattccagagaataaaatgatagaaatgtat 48916081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 50190767 - 50190824
Alignment:
Q  177 gtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    |||||||||||||||| |||||||||| ||| || | ||||||||| |||||||||||    
T  50190767 gtgtgtttgtttcaagatataattgttaatttccggaaataaaatgctaggaatgtat 50190824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 52699465 - 52699521
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaatgataggaat 230  Q
    |||||| ||||||||||||||||| | || ||||||  |||||||||||||||||||    
T  52699465 agggtgcgtttgtttcaagttatattcgtagattcctgggaataaaatgataggaat 52699521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 29091739 - 29091704
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcc 209  Q
    |||||||||||||||||||||||| |||||||||||    
T  29091739 agggtgtgtttgtttcaagttatatttgttgattcc 29091704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 37436630 - 37436680
Alignment:
Q  184 tgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||| |||||| |||||||||| |  ||||||||||||||||||||||    
T  37436630 tgtttcatgttatatttgttgattcacgagaataaaatgataggaatgtat 37436680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 13931885 - 13931930
Alignment:
Q  176 ggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    ||||||||||||| |||||||| |||| |||||| |||||||||||    
T  13931885 ggtgtgtttgtttgaagttatatttgtagattcctaggaataaaat 13931930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 31806759 - 31806807
Alignment:
Q  178 tgtgtttgtttcaagttataattgttgattcccaggaataaaatgatag 226  Q
    |||||||||||||||||||| |||| ||||||   ||||||||||||||    
T  31806759 tgtgtttgtttcaagttatatttgtagattcctgagaataaaatgatag 31806807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 28957 - 29011
Alignment:
Q  180 tgtttgtttcaagttataattgttgattcccaggaataaaatgataggaatgtat 234  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  28957 tgtttgtttcaagttataattgttgattttcgggaataaaatgataggaatgtat 29011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 3564 - 3611
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    |||||||||||||||||||||||| |||| |||| | |||||||||||    
T  3564 agggtgtgtttgtttcaagttatatttgtagatttctaggaataaaat 3611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 4540 - 4493
Alignment:
Q  174 agggtgtgtttgtttcaagttataattgttgattcccaggaataaaat 221  Q
    |||||||||||||||||||||||| |||| |||| | |||||||||||    
T  4540 agggtgtgtttgtttcaagttatatttgtagatttctaggaataaaat 4493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1114 times since January 2019
Visitors: 4402