View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0689_low_1 (Length: 683)
Name: NF0689_low_1
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0689_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 98 - 669
Target Start/End: Complemental strand, 8974587 - 8974016
Alignment:
| Q |
98 |
gagatgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974587 |
gagatgacatagatgttccacttaaaaaattgaacttgttgaagactttacgtgacccaaactccaacacaggaatatttgtaggccatgcagctaagat |
8974488 |
T |
|
| Q |
198 |
tgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974487 |
tgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttcagaaggacctcttgaactataaaaatccacgctaggagctggtttagca |
8974388 |
T |
|
| Q |
298 |
ccaaaagatgctatcttgaaagaaattttttctattgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataa |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974387 |
ccaaaagatgttatcttgaaagaaattttttctattgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataa |
8974288 |
T |
|
| Q |
398 |
tgatatatggaagctggaaccctaaaagttgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattaga |
497 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974287 |
tgatgtatggaagctggaaccctaaaagttgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattaga |
8974188 |
T |
|
| Q |
498 |
aacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaaca |
597 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974187 |
aacttgatcaaaaagagttccattcttgtcttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaaca |
8974088 |
T |
|
| Q |
598 |
attggaatattactagcagagaagtttcctagataaaaagataagccagagagtgagactccattaccaagt |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974087 |
attggaatattactagcagagaagtttcctagataaaaagataagccagagagtgagactccattaccaagt |
8974016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 101 - 669
Target Start/End: Complemental strand, 8963188 - 8962620
Alignment:
| Q |
101 |
atgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattga |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8963188 |
atgacatagatgttccagttaaaaaattgaacttgttgacgactttatgagacccaaaatccaacacaggaacatttggaggccatgcagctaagattga |
8963089 |
T |
|
| Q |
201 |
tgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcacca |
300 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||| ||| ||||| | ||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
8963088 |
cgtaccgggagctgtaatgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcacca |
8962989 |
T |
|
| Q |
301 |
aaagatgctatcttgaaagaaattttttctattgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatga |
400 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
8962988 |
aaagatgtaatcttgaaagacattttttctattgaactagagttaaagttactatgtatgtaatctttgaccatttctccatttttctggttaataatga |
8962889 |
T |
|
| Q |
401 |
tatatggaagctggaaccctaaaagttgtgatagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaac |
500 |
Q |
| |
|
| |||||||| || ||| ||| || |||||||| || ||||| ||||||||||||| || ||||||||||||| | || ||| || |||| ||| |
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|
| T |
8962888 |
tggatggaagcaggtaccgtaagtcttctgatagatcatcttgtgttgtgtttgatataaaaatagctcctacaacttctgctttaaccacattataaat |
8962789 |
T |
|
| Q |
501 |
ttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaatt |
600 |
Q |
| |
|
||||| | |||| || |||||||||||||||| || ||||||| || |||||| ||||||||| ||||| |||||||||| |||| |||||||||| |
|
|
| T |
8962788 |
ttgattagaaagactttcattcttgtcttcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatg |
8962689 |
T |
|
| Q |
601 |
ggaatattactagcagagaagtttcctagataaaaagataagccagagagtgagactccattaccaagt |
669 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| ||||| | |||||||||||||||||||||| |
|
|
| T |
8962688 |
ggaatattactagcagagaagtttcctatataggaagagaagccggtgagtgagactccattaccaagt |
8962620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 101 - 336
Target Start/End: Original strand, 8945896 - 8946128
Alignment:
| Q |
101 |
atgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattga |
200 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||||||| | | || ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8945896 |
atgacgtagatgttccagttaaaaatttgaacttgttgaagacttcggt---cacaggatccaacacaggaagttttgtgggccatgcagctaagattga |
8945992 |
T |
|
| Q |
201 |
tgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcacca |
300 |
Q |
| |
|
|||| ||||| | ||||||||||||||||| |||| ||| ||||| | ||| || ||||| |||||| || | | || | ||| |||||||||| ||| |
|
|
| T |
8945993 |
tgtatcaggagccgtaatgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttcca |
8946092 |
T |
|
| Q |
301 |
aaagatgctatcttgaaagaaattttttctattgaa |
336 |
Q |
| |
|
||| || || ||||||||| || ||| |||||||| |
|
|
| T |
8946093 |
aaaattgataacttgaaagacatatttgctattgaa |
8946128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 105 - 270
Target Start/End: Complemental strand, 8958170 - 8958005
Alignment:
| Q |
105 |
catagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgta |
204 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| ||| | ||| || ||| |||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
8958170 |
catagatgttccacttatcacattgaacttgttgaagatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaagatatttgta |
8958071 |
T |
|
| Q |
205 |
ccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataa |
270 |
Q |
| |
|
|||||| | || |||||||||||||||| || ||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
8958070 |
ccaggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataa |
8958005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 669
Target Start/End: Original strand, 8946351 - 8946470
Alignment:
| Q |
550 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
649 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||| |||||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
|
|
| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
|
| Q |
650 |
gtgagactccattaccaagt |
669 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8946451 |
gtgagactccattaccaagt |
8946470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 105 - 320
Target Start/End: Original strand, 19375774 - 19375989
Alignment:
| Q |
105 |
catagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgta |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||| || ||||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19375774 |
catagatgttccacttatcaaattgaacttgttgaagactttaaaagtccccaaatccaacacatgaacatttgttggccatgcagctaagattgatgta |
19375873 |
T |
|
| Q |
205 |
ccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaag |
304 |
Q |
| |
|
||| || | || ||||| |||||||| ||| ||| ||| | | |||||| |||||||||||||||| ||| || ||||| | ||||||| |||||||| |
|
|
| T |
19375874 |
ccaagagcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaa |
19375973 |
T |
|
| Q |
305 |
atgctatcttgaaaga |
320 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
19375974 |
ttgttttcttgaaaga |
19375989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 451 - 669
Target Start/End: Original strand, 21687400 - 21687618
Alignment:
| Q |
451 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
550 |
Q |
| |
|
|||||||||| |||| |||| |||||| || || || || |||| | | ||| ||| |||||||| |||| ||| ||||||| || |||||||| || | |
|
|
| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
|
| Q |
551 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
650 |
Q |
| |
|
||||| || ||| || | ||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| ||| |
|
|
| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
|
| Q |
651 |
tgagactccattaccaagt |
669 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21687600 |
tgagactccattaccaagt |
21687618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 101 - 351
Target Start/End: Original strand, 21687059 - 21687306
Alignment:
| Q |
101 |
atgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattga |
200 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| ||||||| | | |||||| | ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
21687059 |
atgacatagatgttccatctatcaaattgaagttgttaaagacttcagt---cccaaaattggacacaggaacgtttgtgggccatgcagctaagattga |
21687155 |
T |
|
| Q |
201 |
tgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcacca |
300 |
Q |
| |
|
|||||||||| | || |||||||||||||| |||| ||| ||||| | ||| || || ||||| |||||||||||||| ||||| | || |||| |||| |
|
|
| T |
21687156 |
tgtaccaggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccg |
21687255 |
T |
|
| Q |
301 |
aaagatgctatcttgaaagaaattttttctattgaactggagttagagtta |
351 |
Q |
| |
|
|||| || | |||||||||| || ||| |||||||||| | |||||||||| |
|
|
| T |
21687256 |
aaagctgttttcttgaaagacatgtttgctattgaactagcgttagagtta |
21687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 105 - 295
Target Start/End: Original strand, 34962680 - 34962870
Alignment:
| Q |
105 |
catagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgta |
204 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||| | |||| ||| |||| |||| |||||||| ||||||||||||||| |||||||| || ||| |
|
|
| T |
34962680 |
catagatgttccacttatcaaattgaatttgctgaaaattttatgagactcaaattccatcacaggaacatttgtaggccatgccgctaagatcgaagta |
34962779 |
T |
|
| Q |
205 |
ccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttag |
295 |
Q |
| |
|
||||| | ||||||||||||||||| ||| ||| ||||| | ||| || |||||||||||||| |||| || ||||| |||||||||| |
|
|
| T |
34962780 |
ccaggcgcagtaatgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttag |
34962870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 34963079 - 34963123
Alignment:
| Q |
513 |
agttccattcttgtcttcacagacaacaatcttacttttcacttt |
557 |
Q |
| |
|
||||||||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
34963079 |
agttccattcttgtcttcacacactataatcttgcttttcacttt |
34963123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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