View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0689_low_11 (Length: 393)
Name: NF0689_low_11
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0689_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 27644378 - 27644730
Alignment:
| Q |
14 |
atattaaattgataagattaattaagcatacctcatgtcatacccttttgtttggagtgaagggaacactcaacgagcccaatcaagttcttccctttca |
113 |
Q |
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| T |
27644378 |
atattaaattgataagattaattaagcatacctcatgtcatacacttttgtttggagtgaagggaacactcaacgagcccaatcaagttcttccctttca |
27644477 |
T |
|
| Q |
114 |
tctctatcctat-----tgggtctaactttttggtggcactaaacaactattttgacattaatcaataaataaaacattttattttgcacgtctatgtgt |
208 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644478 |
tctctatactatactattgggtctaactttttggtggcactaaacaactattttgacattaatcaataaataaaacattttattttgcacgtctatgtgt |
27644577 |
T |
|
| Q |
209 |
tattttatcatcatggtcacnnnnnnnnnnnncaattttaaattacgtgatttgtttgttgtgggattagtggattacctaactaataacaaatccccgt |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644578 |
tattttatcatcatggtcac-----tttttttcaattttaaattacgtgatttgtttgttgtgggattagtggattacctaactaataacaaatccccgt |
27644672 |
T |
|
| Q |
309 |
gttatagcttcttggtcacaatccactaactaagaggaagaagaaagggacatcactg |
366 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27644673 |
gttatagcctcttggtcacagtccactaactaagaggaagaagaaagggacatcactg |
27644730 |
T |
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