View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0689_low_12 (Length: 389)
Name: NF0689_low_12
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0689_low_12 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 32309920 - 32309569
Alignment:
| Q |
9 |
atcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32309920 |
atcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaaga |
32309821 |
T |
|
| Q |
109 |
acggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaac |
208 |
Q |
| |
|
|||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
32309820 |
acggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaac |
32309721 |
T |
|
| Q |
209 |
ttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatcacagccctgatttcgcaa |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || |
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|
| T |
32309720 |
ctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaa |
32309621 |
T |
|
| Q |
309 |
caccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagat |
360 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
32309620 |
caccacaagtagttagaacaacaaatcaaaaccattatgaaagcaagaagat |
32309569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 32305787 - 32305433
Alignment:
| Q |
9 |
atcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32305787 |
atcataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaaga |
32305688 |
T |
|
| Q |
109 |
acggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaac |
208 |
Q |
| |
|
||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |
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|
| T |
32305687 |
acggaatctcttgtgacaagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaac |
32305588 |
T |
|
| Q |
209 |
ttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatcacagccctgatttcgcaa |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| |||| |
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|
| T |
32305587 |
ctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccatagtcttccaatagcaaggaagcatcacatccctgatttggcaa |
32305488 |
T |
|
| Q |
309 |
---caccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagat |
360 |
Q |
| |
|
|||||||||| ||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
32305487 |
caccaccacaagtagttagaacagcaaatcaaagccattatgaaagcaagaagat |
32305433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 32564930 - 32565265
Alignment:
| Q |
25 |
taaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaacggaatctcttgcag |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
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|
| T |
32564930 |
taaagtgaaaatgcatcagaattaagagcattcaacagaagatatatgttataaacttataggtgcgaggaacataccaaaagaacggaatctcttgcgg |
32565029 |
T |
|
| Q |
125 |
cgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcatgtcaactttatcaaaacttttcaacatttgatt |
224 |
Q |
| |
|
| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||||| |
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|
| T |
32565030 |
caagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt |
32565129 |
T |
|
| Q |
225 |
tggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatcacagccctgatttcgcaacaccacaagttgttag |
324 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
32565130 |
tggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatcacaaccctgatttagaaacaccacaagtagttag |
32565229 |
T |
|
| Q |
325 |
aaaagaaaatcaaaaccattatgaaagcaagaagat |
360 |
Q |
| |
|
|| || |||||||||||||||||||| ||||||||| |
|
|
| T |
32565230 |
aacagcaaatcaaaaccattatgaaatcaagaagat |
32565265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 91 - 360
Target Start/End: Original strand, 32814619 - 32814888
Alignment:
| Q |
91 |
taggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
32814619 |
taggaacaaaccaaaagaacggaatctcttacggcaagagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatca |
32814718 |
T |
|
| Q |
191 |
tgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagcatc |
290 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
32814719 |
agtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatc |
32814818 |
T |
|
| Q |
291 |
acagccctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagat |
360 |
Q |
| |
|
||| ||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
32814819 |
acatccctgatttcgtaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagat |
32814888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 88 - 325
Target Start/End: Complemental strand, 28221052 - 28220815
Alignment:
| Q |
88 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
187 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28221052 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaa |
28220953 |
T |
|
| Q |
188 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatcaccattgtcctccaacagcaaggaagc |
287 |
Q |
| |
|
||| ||||||||| ||| || |||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28220952 |
tcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcataggaactgtttctatcaccattgtcctccaacaacaaggaagc |
28220853 |
T |
|
| Q |
288 |
atcacagccctgatttcgcaacaccacaagttgttaga |
325 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
28220852 |
atcacaaccctgattcagcaacaccacaagtagttaga |
28220815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 28215204 - 28215376
Alignment:
| Q |
88 |
tgttaggaacaaaccaaaagaacggaatctcttgcagcgagagctagtatgtcagcacaagacacaacgccgggacatgcttgttccacctcctccttaa |
187 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28215204 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaa |
28215303 |
T |
|
| Q |
188 |
tcatgtcaactttatcaaaacttttcaacatttgatttggaatagcctgcttctcttaggaaccgtttctatc |
260 |
Q |
| |
|
||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
28215304 |
tcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcataggaaatgtttctatc |
28215376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 32787356 - 32787451
Alignment:
| Q |
9 |
atcataggtgcataaataaagtgaaaatgcataagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
104 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32787356 |
atcatacgttcataaataaagtgaaaatgcatcagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
32787451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 32814568 - 32814610
Alignment:
| Q |
9 |
atcataggtgcataaataaagtgaaaatgcataagaattaaga |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
32814568 |
atcataggtgcataaataaagtgaaaatgcatcataattaaga |
32814610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 302008 - 301945
Alignment:
| Q |
297 |
ctgatttcgcaacaccacaagttgttagaaaagaaaatcaaaaccattatgaaagcaagaagat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
302008 |
ctgatttcgcaacaccacaagttgttagaaaagcaaatcaaaaccattatgaaagcaagaagat |
301945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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