View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0689_low_17 (Length: 343)

Name: NF0689_low_17
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0689_low_17
NF0689_low_17
[»] chr7 (29 HSPs)
chr7 (79-245)||(3148302-3148468)
chr7 (137-245)||(6790399-6790507)
chr7 (114-236)||(1302277-1302399)
chr7 (118-236)||(8660214-8660332)
chr7 (129-243)||(10493008-10493122)
chr7 (105-245)||(8647658-8647798)
chr7 (129-245)||(13332155-13332271)
chr7 (145-243)||(7876841-7876939)
chr7 (117-245)||(8630197-8630325)
chr7 (114-245)||(8655315-8655446)
chr7 (114-245)||(8668431-8668562)
chr7 (117-245)||(8584541-8584669)
chr7 (129-245)||(27829350-27829466)
chr7 (137-234)||(8610653-8610750)
chr7 (116-245)||(17261360-17261489)
chr7 (146-245)||(8602732-8602831)
chr7 (161-245)||(8591411-8591495)
chr7 (116-245)||(17269068-17269197)
chr7 (146-237)||(8582661-8582752)
chr7 (161-237)||(8635512-8635588)
chr7 (137-237)||(29577002-29577102)
chr7 (152-234)||(8104069-8104151)
chr7 (152-240)||(8546679-8546767)
chr7 (152-191)||(8382289-8382328)
chr7 (146-243)||(8577287-8577384)
chr7 (152-207)||(8016336-8016391)
chr7 (146-213)||(8568836-8568903)
chr7 (146-237)||(8572588-8572679)
chr7 (148-237)||(8538804-8538893)
[»] chr1 (3 HSPs)
chr1 (114-245)||(4677545-4677676)
chr1 (116-245)||(34465253-34465382)
chr1 (145-245)||(15596056-15596156)
[»] chr5 (2 HSPs)
chr5 (117-245)||(42554192-42554320)
chr5 (151-245)||(28220950-28221044)
[»] chr4 (5 HSPs)
chr4 (98-245)||(9323069-9323217)
chr4 (98-245)||(9377548-9377696)
chr4 (98-245)||(9335041-9335188)
chr4 (114-227)||(30776083-30776196)
chr4 (146-240)||(35133452-35133546)
[»] chr2 (9 HSPs)
chr2 (145-237)||(16656613-16656705)
chr2 (109-245)||(43626281-43626417)
chr2 (113-240)||(12244413-12244540)
chr2 (116-240)||(7543245-7543369)
chr2 (116-240)||(12000301-12000425)
chr2 (146-245)||(16661071-16661170)
chr2 (117-245)||(12257919-12258047)
chr2 (146-245)||(12235796-12235895)
chr2 (117-240)||(14705432-14705555)
[»] chr8 (2 HSPs)
chr8 (129-245)||(43745805-43745918)
chr8 (148-240)||(12529868-12529960)
[»] chr6 (1 HSPs)
chr6 (117-197)||(28911283-28911363)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 3148302 - 3148468
Alignment:
79 ccaacaatatagaaatgaaagattatagaaaagatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaac 178  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
3148302 ccaacaatacagaaattaaagattatagaaaagatatttaccaaaaacagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaac 3148401  T
179 ctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3148402 ctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 3148468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 6790399 - 6790507
Alignment:
137 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 236  Q
    ||||| ||||||||||||| ||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
6790399 gggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgt 6790498  T
237 gaataatct 245  Q
    |||||||||    
6790499 gaataatct 6790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 1302277 - 1302399
Alignment:
114 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    |||||||||||||| | |||||||| || || ||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||    
1302277 atttaccaaaaacagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgt 1302376  T
214 ggttttgttgccttggtcattgt 236  Q
     ||||||||||||||||| ||||    
1302377 tgttttgttgccttggtcgttgt 1302399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 8660214 - 8660332
Alignment:
118 accaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggtt 217  Q
    |||||||||| ||||| |||| || || ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||    
8660214 accaaaaacagtgtttacaggattggttgcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgtt 8660313  T
218 ttgttgccttggtcattgt 236  Q
    ||||| |||||||| ||||    
8660314 ttgtttccttggtcgttgt 8660332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 10493122 - 10493008
Alignment:
129 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 228  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||   |||||||||||||||||||||| ||| | || |||||    
10493122 tgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttg 10493023  T
229 gtcattgtgaataat 243  Q
     ||||||||||||||    
10493022 atcattgtgaataat 10493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 8647658 - 8647798
Alignment:
105 agaaaagatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaa 204  Q
    |||| ||| |||||||||| ||| ||||   |||||| |  ||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||    
8647658 agaatagaaatttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaa 8647757  T
205 agaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||    
8647758 agaaggtgtagttctgtttccttgatcattgtgaataatct 8647798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 13332271 - 13332155
Alignment:
129 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 228  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||| ||| ||||||||||   |||||||||||||||||||||| ||| | || |||||    
13332271 tgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttg 13332172  T
229 gtcattgtgaataatct 245  Q
     ||||||||||||||||    
13332171 atcattgtgaataatct 13332155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 7876939 - 7876841
Alignment:
145 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataat 243  Q
    |||||| ||||| || ||||||||||||| ||||||||||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||    
7876939 ggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataat 7876841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 8630197 - 8630325
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 216  Q
    ||||||| ||| ||||||  |||||  ||||||| |||| |||||||||| |||||||||||||||||||||| || |||||||| || ||||||||| |    
8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
217 tttgttgccttggtcattgtgaataatct 245  Q
    ||| |||||||  ||||||||||||||||    
8630297 tttattgccttcatcattgtgaataatct 8630325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 8655315 - 8655446
Alignment:
114 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    |||||||||| ||| ||||||| ||||| || |||| |||||||| |||  |||  |||| ||||||||||| ||||||||||||||||| |||||||||    
8655315 atttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaaggtgt 8655414  T
214 ggttttgttgccttggtcattgtgaataatct 245  Q
     ||| | |||||||| ||||||||||||||||    
8655415 agttctattgccttgatcattgtgaataatct 8655446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 8668431 - 8668562
Alignment:
114 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    |||||||||| | | ||||||||||||| || |||| |||||||||||||||||| |||| ||||||||| ||||   ||||||||||||||||||||||    
8668431 atttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgt 8668530  T
214 ggttttgttgccttggtcattgtgaataatct 245  Q
      ||  ||| ||||| ||||||||||||||||    
8668531 tattcggtttccttgatcattgtgaataatct 8668562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 8584669 - 8584541
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 216  Q
    ||||||| ||| |||| || |||||  | ||||| |||| |||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||| |    
8584669 taccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgat 8584570  T
217 tttgttgccttggtcattgtgaataatct 245  Q
    ||| |||||||  || |||||||||||||    
8584569 tttattgccttcatcgttgtgaataatct 8584541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 27829466 - 27829350
Alignment:
129 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 228  Q
    |||||| |||||| |  |||||||| ||||||||||||||||||| |||||| || |  || |||||||||||| |||||||||| || |||||||||||    
27829466 tgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttg 27829367  T
229 gtcattgtgaataatct 245  Q
     ||||||||||||||||    
27829366 ttcattgtgaataatct 27829350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 8610653 - 8610750
Alignment:
137 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcatt 234  Q
    |||||||  ||||||||||| |||||||||||||| | ||||||||||||| ||| |||||||||||||||||| |||||| |||| ||||| |||||    
8610653 gggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 8610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 17261360 - 17261489
Alignment:
116 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 215  Q
    |||||||| ||  ||||||| |||||| ||||||||||||||||||| |||||||| | |||||||| ||| | ||  ||||||||||||||||| ||      
17261360 ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa 17261459  T
216 ttttgttgccttggtcattgtgaataatct 245  Q
    ||||||| ||||| ||||||||||| ||||    
17261460 ttttgtttccttgatcattgtgaatgatct 17261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 8602732 - 8602831
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||| ||||| || ||||||||||| | |||||||| ||||||||| ||||||||||||||||| || ||| |||| ||||| ||||||||||||||||    
8602732 gcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 8602831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 8591411 - 8591495
Alignment:
161 gcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||  || | || ||||| ||||||||||||||||    
8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatct 8591495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 17269068 - 17269197
Alignment:
116 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 215  Q
    |||||||| ||  ||||||| |||||  ||||||||||||||||||| | |||||| |  ||||||| ||| | ||  |||||||||||||| || || |    
17269068 ttaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtag 17269167  T
216 ttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||||||| |||||||| |||||||    
17269168 ttttgttgccttgatcattgtgtataatct 17269197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 8582661 - 8582752
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 237  Q
    ||||||||||| || ||||||||||||| ||| ||||||  || ||| ||||||||| |||||||||| |||||||| ||||| ||||||||    
8582661 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 8582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 8635588 - 8635512
Alignment:
161 gcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 237  Q
    ||||||||||||| |||||||||  | ||||||||||||||| ||||||||||| || |||| ||||| ||||||||    
8635588 gcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtg 8635512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 29577102 - 29577002
Alignment:
137 gggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgt 236  Q
    ||||||| |||||| ||||| |||||||||| |||||  |||||| |   |||||||||||| |||| ||||||||||||| | |||||||| |||||||    
29577102 gggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattgt 29577003  T
237 g 237  Q
    |    
29577002 g 29577002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
152 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcatt 234  Q
    |||||||||||||||||||| | |||||||| |  |||||||||||||||| |||| ||||| ||| |||| ||||| |||||    
8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 8546679 - 8546767
Alignment:
152 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 240  Q
    ||||| || ||||||||||||| || ||||||   ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
8546679 tgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 8382328 - 8382289
Alignment:
152 tgattcttagcagcatcaccaaccaacctttgatcatcag 191  Q
    |||||||||||||||||||||||||||||||||| |||||    
8382328 tgattcttagcagcatcaccaaccaacctttgatgatcag 8382289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 8577287 - 8577384
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataat 243  Q
    ||||||||||| || |||||||| |||| ||| ||||||  ||  || ||||||||| ||||||| |||||| |||| ||||| |||||||| |||||    
8577287 gcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataat 8577384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 8016391 - 8016336
Alignment:
152 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaaga 207  Q
    |||||||||||||||||||| | |||||||| |  |||||||||||||||| ||||    
8016391 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataaga 8016336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 8568836 - 8568903
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    ||||||||||| || ||||||||||||| ||| ||||||   | ||||||||||||| ||||||||||    
8568836 gcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgt 8568903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 8572588 - 8572679
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 237  Q
    ||||||||||| || ||||||||||| | ||| ||||||  || ||| ||||||||| |||| || || ||| |||| ||||||||||||||    
8572588 gcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtg 8572679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 8538804 - 8538893
Alignment:
148 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 237  Q
    ||||||||| || ||||||||||||| ||| | ||||  || | | ||| ||||| ||||||||||||||||||| ||||| || |||||    
8538804 agcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtg 8538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 4677676 - 4677545
Alignment:
114 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    |||||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||    
4677676 atttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgt 4677577  T
214 ggttttgttgccttggtcattgtgaataatct 245  Q
     |||||||||||||| ||||||| ||||||||    
4677576 tgttttgttgccttgttcattgtaaataatct 4677545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 34465382 - 34465253
Alignment:
116 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 215  Q
    |||||||||||| |||| |  ||||| || |||| ||||||||||||||||| ||| | ||| |||||||||| ||| ||||||||||||||||||||||    
34465382 ttaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtgg 34465283  T
216 ttttgttgccttggtcattgtgaataatct 245  Q
    || |||| ||||||||||||| ||||||||    
34465282 ttgtgttaccttggtcattgtcaataatct 34465253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 15596056 - 15596156
Alignment:
145 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatc 244  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||  || |||| |||||||||||||| ||||||    
15596056 ggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatc 15596155  T
245 t 245  Q
    |    
15596156 t 15596156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 42554320 - 42554192
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 216  Q
    ||||||| ||| ||||||  ||||| ||||| | ||||| ||||||||||||||||| |||||||| || || ||| |||||||||||||||||||| ||    
42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
217 tttgttgccttggtcattgtgaataatct 245  Q
    |||||||||||| ||||||||||||||||    
42554220 tttgttgccttgatcattgtgaataatct 42554192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 28220950 - 28221044
Alignment:
151 ttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    |||||| ||||||||||| |||| |||||||| |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
28220950 ttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatct 28221044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 9323217 - 9323069
Alignment:
98 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 196  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||   |||||    
9323217 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaa 9323118  T
197 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||||||||||| |||  ||| ||||| ||||||||||||||||    
9323117 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatct 9323069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 9377696 - 9377548
Alignment:
98 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 196  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||   |||||    
9377696 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaa 9377597  T
197 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||||||||||| |||  ||| ||||| ||||||||||||||||    
9377596 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatct 9377548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 9335188 - 9335041
Alignment:
98 agattatagaaa-agatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaa 196  Q
    |||| ||||||| ||| |||||||||| | | ||||||||||||| || |||| |||||||||||||||||||||| | |||||||| ||||   |||||    
9335188 agataatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccatc-aacctttgctcattgttgaaa 9335090  T
197 gcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||||||||||||||| |||  ||| ||||| ||||||||||||||||    
9335089 gcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatct 9335041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 30776083 - 30776196
Alignment:
114 atttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgt 213  Q
    |||||||||| ||| |||||| ||||||  | ||||| || | |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||    
30776083 atttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgt 30776182  T
214 ggttttgttgcctt 227  Q
    | ||||| ||||||    
30776183 gattttgctgcctt 30776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 35133452 - 35133546
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 240  Q
    |||||||||||||||||||||||||| | |||||||||||| | ||||||||||| | |||||||||| |||||||||| ||| || ||||||||    
35133452 gcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaat 35133546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 16656705 - 16656613
Alignment:
145 ggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 237  Q
    |||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||| |||| || |||||||||||    
16656705 ggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtg 16656613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 43626281 - 43626417
Alignment:
109 aagatatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaa 208  Q
    |||| |||||||||| ||| ||||||| ||||  | || |||||||  ||||||||||||||||| ||||||||| || | |||||||| ||||||||||    
43626281 aagaaatttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaa 43626380  T
209 ggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    ||||| ||| |||| |||||||||||||| |||||||    
43626381 ggtgtagttctgtttccttggtcattgtggataatct 43626417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 12244540 - 12244413
Alignment:
113 tatttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtg 212  Q
    ||||||||||| ||| |||||| || ||| |  ||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||| |||||||||    
12244540 tatttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtg 12244441  T
213 tggttttgttgccttggtcattgtgaat 240  Q
    | ||| ||||||| || || ||||||||    
12244440 ttgttctgttgccctgatcgttgtgaat 12244413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 7543245 - 7543369
Alignment:
116 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 215  Q
    |||||||| ||| |||||| |||||| |  ||||||||||||||||||  |||||| | |||||| ||||  || ||||||||||||||||||||||| |    
7543245 ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg 7543344  T
216 ttttgttgccttggtcattgtgaat 240  Q
    || ||||||||||||| ||||||||    
7543345 ttctgttgccttggtcgttgtgaat 7543369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 12000301 - 12000425
Alignment:
116 ttaccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 215  Q
    |||||||||||| |||||| || ||| |  || ||||| || ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||      
12000301 ttaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtta 12000400  T
216 ttttgttgccttggtcattgtgaat 240  Q
    ||||||||||||| || ||||||||    
12000401 ttttgttgccttgatcgttgtgaat 12000425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 16661170 - 16661071
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    |||||||||| |||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||  || ||||| |||||||    
16661170 gcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatct 16661071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 12258047 - 12257919
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 216  Q
    ||||||| ||| ||| || |||||| |  |||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||| ||||||| || ||    
12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
217 tttgttgccttggtcattgtgaataatct 245  Q
    | |||| ||||| || |||||||| ||||    
12257947 tctgtttccttgatcgttgtgaatgatct 12257919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 12235796 - 12235895
Alignment:
146 gcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatct 245  Q
    |||||||||||||||||||||||||||| |||||| ||||  || |||||||||||||||||||| || ||| | |||||||| || |||||||| ||||    
12235796 gcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatct 12235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 14705432 - 14705555
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggt 216  Q
    ||||||| ||| |||||  |||||| |  |||||||||||||||||||||||||||| |||||  ||||  || |||||||||||||||||||| || ||    
14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
217 tttgttgccttggtcattgtgaat 240  Q
    | | |||||||| || ||||||||    
14705532 tctattgccttgatcgttgtgaat 14705555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 43745805 - 43745918
Alignment:
129 tgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttg 228  Q
    |||||| |||||| ||||| | ||||||||||||||| ||||| | |||||||| || |||||| |||||||||||||||   || ||||||||||||||    
43745805 tgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---gttgttttgttgccttg 43745901  T
229 gtcattgtgaataatct 245  Q
     ||||||||||||||||    
43745902 atcattgtgaataatct 43745918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 12529868 - 12529960
Alignment:
148 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 240  Q
    ||||||||| || ||||||| ||||| ||| || |||  || ||| ||||||||| |||||||||| |||||||| ||||| |||||||||||    
12529868 agcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 28911283 - 28911363
Alignment:
117 taccaaaaacaatgttttcagggtttgtggcagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaag 197  Q
    |||| |||||| ||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
28911283 tacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatcatcggtgaaag 28911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 556 times since January 2019
Visitors: 4385