View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0689_low_20 (Length: 301)

Name: NF0689_low_20
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0689_low_20
NF0689_low_20
[»] chr3 (4 HSPs)
chr3 (77-299)||(32059816-32060038)
chr3 (77-301)||(13076713-13076934)
chr3 (76-299)||(11684828-11685048)
chr3 (77-285)||(51423158-51423363)
[»] chr4 (6 HSPs)
chr4 (77-301)||(19848447-19848671)
chr4 (82-301)||(19847066-19847285)
chr4 (77-301)||(19847907-19848133)
chr4 (109-297)||(14463788-14463976)
chr4 (77-183)||(19847600-19847706)
chr4 (241-301)||(7055959-7056019)
[»] scaffold0167 (2 HSPs)
scaffold0167 (77-301)||(16163-16387)
scaffold0167 (190-301)||(20533-20644)
[»] scaffold0442 (1 HSPs)
scaffold0442 (77-301)||(13747-13967)
[»] chr8 (2 HSPs)
chr8 (77-301)||(8210764-8210988)
chr8 (77-301)||(9288980-9289201)
[»] chr2 (2 HSPs)
chr2 (193-301)||(38979066-38979169)
chr2 (77-141)||(38974680-38974744)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 77 - 299
Target Start/End: Original strand, 32059816 - 32060038
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059816 atcaacttccaaaaaatcccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 32059915  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  32059916 tgcgggtgatacaagaaagtgtactaaatattgtttatatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaattaa 32060015  T
Q  277 attgatgaaatggaaagagattg 299  Q
    |||| ||||||||||||||||||    
T  32060016 attggtgaaatggaaagagattg 32060038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 77 - 301
Target Start/End: Complemental strand, 13076934 - 13076713
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  13076934 atcaacttccaaaaaattccctcttaacacagatttttattcaactttaacttttcatcaaaccacta---ggattcatggcaatttactatcccaaact 13076838  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  13076837 tgcgggtggtacaagaaagtgtactaaatattgtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaattaa 13076738  T
Q  277 attgatgaaatggaaagagattgct 301  Q
    |||| ||||||||||||||||||||    
T  13076737 attggtgaaatggaaagagattgct 13076713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 76 - 299
Target Start/End: Original strand, 11684828 - 11685048
Alignment:
Q  76 catcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaac 175  Q
    |||||||||||||||||| |||  |||||||| | ||||||||||||||||||||||||||||||| | |   |||||||| |||| |||||||||||||    
T  11684828 catcaacttccaaaaaatccccatttaacacagacttttattcaactttaacttttcatcaaaccaatga---gattcatggcaatatactatcccaaac 11684924  T
Q  176 ttacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaatta 275  Q
    || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  11684925 ttgcgggtggtacaagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacatcacttcaaaatta 11685024  T
Q  276 aattgatgaaatggaaagagattg 299  Q
    ||||| ||||||||||||||||||    
T  11685025 aattggtgaaatggaaagagattg 11685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 51423158 - 51423363
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  51423158 atcaacttccaaaaaatcccctcttaacacagatttttattcaactttaacttttcatcaaaccacta---ggattcatggcaatttactatcccaaact 51423254  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    |  ||||| ||| |||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| || ||||||||    
T  51423255 tgggggtggtacaagaaagggtactaaatactgtttctatcttttcctcccattatctactcagaaacattatttcctattcacatcactttaaaattaa 51423354  T
Q  277 attgatgaa 285  Q
    |||| ||||    
T  51423355 attggtgaa 51423363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 19848447 - 19848671
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19848447 atcaacttccaaaaattcccttcttaacacaaatttttattcaactttaactttttatcaaaccactaaaaggattcatggcaatttactatcccaaact 19848546  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  19848547 tgcgggtgatacaagaaagtgtactaaatattgtttctatcttttcctcccattatctactcaataacattatttcctattcacatcacttcaaaattaa 19848646  T
Q  277 attgatgaaatggaaagagattgct 301  Q
    |||| ||||||||||||||||||||    
T  19848647 attggtgaaatggaaagagattgct 19848671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 82 - 301
Target Start/End: Original strand, 19847066 - 19847285
Alignment:
Q  82 cttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaacttacgg 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||    
T  19847066 cttccaaaaaatcccctcttaacacaaatttttattcaactttatcttttcatcaaaccactaaaaggattcatggcaatttaccatctcaaacttgcgg 19847165  T
Q  182 gtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaaattga 281  Q
    ||||||| ||||||||||||||||||| ||| | |||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  19847166 gtgatacaagaaagtgtactaaatattatttttgtcttttcctcccaatatctactcaaaaacattatttcctattcacatcacttcaaaattaaattgg 19847265  T
Q  282 tgaaatggaaagagattgct 301  Q
    ||||||||||||||||||||    
T  19847266 tgaaatggaaagagattgct 19847285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 19847907 - 19848133
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaa-- 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||      
T  19847907 atcaacttccaaaaaatcccctcttaacacaaatttttattcaactttaatttttcatcaaaccactaaaaggattcatgacaatttactatcttaaaaa 19848006  T
Q  175 cttacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaatt 274  Q
    ||| | |||||||| ||||||||||||||||||| ||| | |||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||||    
T  19848007 cttgcaggtgatacaagaaagtgtactaaatattatttttgtcttttcctcccaatatctactcaaaaacattatttcctattcacatcacttcaaaatt 19848106  T
Q  275 aaattgatgaaatggaaagagattgct 301  Q
    |||||| ||||||||||||||||||||    
T  19848107 aaattggtgaaatggaaagagattgct 19848133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 14463976 - 14463788
Alignment:
Q  109 atttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaacttacgggtgatacgagaaagtgtactaaatatt 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  14463976 atttttattcaactttaatttttcatcaaaccactaaaaggattcatggcaatttactatcccaaacttgcgggtggtacaagaaagtgtactaaatatt 14463877  T
Q  209 gtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaaattgatgaaatggaaagagat 297  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||    
T  14463876 gtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaattaaattggtgaaatgaaaagagat 14463788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 19847600 - 19847706
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  19847600 atcaacttccaaaaaatcccctcttaatacagatttttattcaactttaactttttatcaaaccattaaaaggattcatggcaatttactatcccaaact 19847699  T
Q  177 tacgggt 183  Q
    | |||||    
T  19847700 tgcgggt 19847706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 7056019 - 7055959
Alignment:
Q  241 aaacattatttcctattcacgtcatttcaaaattaaattgatgaaatggaaagagattgct 301  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  7056019 aaacattatttcctattcacatcacttcaaaattaaattggtgaaatggaaagagattgct 7055959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 77 - 301
Target Start/End: Complemental strand, 16387 - 16163
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    |||||||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  16387 atcaacttccaaaaaatctcctcttaacacatatttttgttcaactttaacttttcatcaaaccactaaaaggattcatggcaatttactatcccaaagt 16288  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  16287 tgcaggtgatacaagaaagtgtactaaatattgtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaattaa 16188  T
Q  277 attgatgaaatggaaagagattgct 301  Q
    |||| ||||||||||||||||||||    
T  16187 attggtgaaatggaaagagattgct 16163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 20644 - 20533
Alignment:
Q  190 agaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaaattgatgaaatgg 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  20644 agaaagtgtactaaatattgtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaattaaattggtgaaatgg 20545  T
Q  290 aaagagattgct 301  Q
    ||||||||||||    
T  20544 aaagagattgct 20533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 77 - 301
Target Start/End: Complemental strand, 13967 - 13747
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  13967 atcaacttccaaaaa-tcccttcttaacacatatttttattcaactttaacttttcatcaaaccacta---ggattcatggcaatttactatcccaaact 13872  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| || ||||||||    
T  13871 tgcgggtggtacaagaaagtgtactaaatattgtttctatcttttcctcccattatctactcaaaaacattattttctattcacatcacttaaaaattaa 13772  T
Q  277 attgatgaaatggaaagagattgct 301  Q
    |||| ||||||||||||||||||||    
T  13771 attggtgaaatggaaagagattgct 13747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 8210764 - 8210988
Alignment:
Q  77 atcaacttccaaaaaattccc-tcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaac 175  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||||    
T  8210764 atcaacttccaaaaaaatcccctcttaacacaaatttttattcaactttaaattttcatcaaaccacta---ggattcatggcaatttactatcccaaac 8210860  T
Q  176 tta--cgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaat 273  Q
    ||   |||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  8210861 ttttgcgggtggtacaagaaagtgtacaaaatattgtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaat 8210960  T
Q  274 taaattgatgaaatggaaagagattgct 301  Q
    ||||||| ||||||||||||||||||||    
T  8210961 taaattggtgaaatggaaagagattgct 8210988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 9288980 - 9289201
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaaccactaaaaggattcatgacaatttactatcccaaact 176  Q
    ||||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||    
T  9288980 atcaacttccaaaaaatcctctcttaacaaagatttttattcaactttaacttttcatcaaaccacta---ggattcatggcaatttactgtcccaaact 9289076  T
Q  177 tacgggtgatacgagaaagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaa 276  Q
    | |  ||| ||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  9289077 tgcaagtggtacaagaaggtgtactaaatattgtttctatcttttcctcccattatctcctcaaaaacattatttcctattcgcatcacttcaaaattaa 9289176  T
Q  277 attgatgaaatggaaagagattgct 301  Q
    |||| ||||||||||||||||||||    
T  9289177 attggtgaaatggaaagagattgct 9289201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 38979066 - 38979169
Alignment:
Q  193 aagtgtactaaatattgtttctatcttttcctctcattatctactcaaaaacattatttcctattcacgtcatttcaaaattaaattgatgaaatggaaa 292  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||     | |||||||||||    
T  38979066 aagtgtactaaatattgtttctatcttttcctcccattatctactcaaaaacattatttcctattcacatcacttcaaaatt-----ggtgaaatggaaa 38979160  T
Q  293 gagattgct 301  Q
    |||||||||    
T  38979161 gagattgct 38979169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 38974680 - 38974744
Alignment:
Q  77 atcaacttccaaaaaattccctcttaacacaaatttttattcaactttaacttttcatcaaacca 141  Q
    |||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  38974680 atcaacttccgaaaaatctcctcttaacacagatttttattcaactttaacttttcatcaaacca 38974744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 964 times since January 2019
Visitors: 4400