View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0689_low_29 (Length: 262)

Name: NF0689_low_29
Description: NF0689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0689_low_29
NF0689_low_29
[»] chr3 (2 HSPs)
chr3 (1-237)||(40177552-40177788)
chr3 (30-75)||(54285851-54285896)
[»] chr5 (2 HSPs)
chr5 (1-237)||(23989388-23989630)
chr5 (2-50)||(23995020-23995068)
[»] chr8 (1 HSPs)
chr8 (25-77)||(42757591-42757643)
[»] chr7 (3 HSPs)
chr7 (37-77)||(5997654-5997694)
chr7 (37-77)||(38887316-38887356)
chr7 (41-77)||(45550983-45551019)
[»] chr1 (2 HSPs)
chr1 (37-77)||(16801958-16801998)
chr1 (37-77)||(42031736-42031776)
[»] chr2 (2 HSPs)
chr2 (43-77)||(45631188-45631222)
chr2 (45-77)||(16591577-16591609)
[»] chr4 (5 HSPs)
chr4 (37-77)||(20627511-20627552)
chr4 (30-77)||(12206748-12206796)
chr4 (37-77)||(23089313-23089353)
chr4 (37-77)||(31689162-31689202)
chr4 (30-77)||(31908389-31908437)
[»] scaffold0015 (1 HSPs)
scaffold0015 (37-77)||(45319-45358)
[»] chr6 (1 HSPs)
chr6 (37-77)||(8683899-8683939)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40177788 - 40177552
Alignment:
Q  1 ctaggtgaaaagatgttggttgtttaaatcttcgtaaaaatgagtgggtctattgtaacaaactcctatatatatatttcaataattttttaactagaat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40177788 ctaggtgaaaaggtgttggttgtttaaatcttcgtaaaaatgagtgggtctattgtaacaaactcctatatatatatttcaataattttttaactagaat 40177689  T
Q  101 tatttcaatatattcttttagattcagaaatgttaaaacataaaaagataactcttattaaactagacaacgttataattggagcattgaagattcgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40177688 tatttcaatatattcttttagattcagaaatgttaaaacataaaaagataactcttattaaactagacaacgttataattggagcattgaagattcgtat 40177589  T
Q  201 aaatattaatgtctcgatgaggtatttggtacatgat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  40177588 aaatattaatgtctcgatgaggtatttggtacatgat 40177552  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 54285851 - 54285896
Alignment:
Q  30 cttcgtaaaaatgagtgggtctattgtaacaaactcctatatatat 75  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  54285851 cttcataaaaatgagtgggtctattgtagcaaacccctatatatat 54285896  T

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Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23989630 - 23989388
Alignment:
Q  1 ctaggtgaaaagatgttggttgtttaaatcttcgtaaaaatgagtgggtctattgtaacaaactcctatatatatat------ttcaataattttttaac 94  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      |||||||||||||||||    
T  23989630 ctaggtgaaaaggtgttggttgtttaaatcttcgtaaaaatgagtgggtctattgtagcaaactcctatatatatatatatatttcaataattttttaac 23989531  T
Q  95 tagaattatttcaatatattcttttagattcagaaatgttaaaacataaaaagataactcttattaaactagacaacgttataattggagcattgaagat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23989530 tagaattatttcaatatattcttttagattcagaaatgttaaaacataaaaagataactcttattaaactagacaacgttataattggagcattgaagat 23989431  T
Q  195 tcgtataaatattaatgtctcgatgaggtatttggtacatgat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23989430 tcgtataaatattaatgtctcgatgaggtatttggtacatgat 23989388  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 23995068 - 23995020
Alignment:
Q  2 taggtgaaaagatgttggttgtttaaatcttcgtaaaaatgagtgggtc 50  Q
    ||||||||||| ||||||||| ||||||||  |||||||||||||||||    
T  23995068 taggtgaaaaggtgttggttgcttaaatctcagtaaaaatgagtgggtc 23995020  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 42757643 - 42757591
Alignment:
Q  25 taaatcttcgtaaaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  42757643 taaaccttcataaaaatgagtgggtctattgtagcaaacccctatatatatat 42757591  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 5997654 - 5997694
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  5997654 aaaatgagtgggtctattgtagcaaacccctatatatatat 5997694  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 38887356 - 38887316
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    |||||||||| |||||||||| ||||| |||||||||||||    
T  38887356 aaaatgagtgagtctattgtagcaaacccctatatatatat 38887316  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 45551019 - 45550983
Alignment:
Q  41 tgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  45551019 tgagtgggtctattgtagcaaacccctatatatatat 45550983  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 16801998 - 16801958
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  16801998 aaaatgagtgggtctattgtagcaaacccctatatatatat 16801958  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 42031736 - 42031776
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  42031736 aaaatgagtgggtctattgtagcaaacccctatatatatat 42031776  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 45631188 - 45631222
Alignment:
Q  43 agtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| |||||||||||||    
T  45631188 agtgggtctattgtaacaaacccctatatatatat 45631222  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 16591577 - 16591609
Alignment:
Q  45 tgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||| |||||||||||||||||||    
T  16591577 tgggtctattgtagcaaactcctatatatatat 16591609  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 20627552 - 20627511
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcc-tatatatatat 77  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  20627552 aaaatgagtgggtctattgtagcaaactccatatatatatat 20627511  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 12206796 - 12206748
Alignment:
Q  30 cttcgtaaaaatgagtgggtctattgtaacaaactcc-tatatatatat 77  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||||||    
T  12206796 cttcataaaaatgagtgggtctattgtagcaaaccccgtatatatatat 12206748  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 23089313 - 23089353
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  23089313 aaaatgagtgggtctattgtagcaaacccttatatatatat 23089353  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 31689202 - 31689162
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  31689202 aaaatgagtgggtctattgtagcaaatccctatatatatat 31689162  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 31908389 - 31908437
Alignment:
Q  30 cttcgtaaaaatgagtgggtctattgtaacaaactcc-tatatatatat 77  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||||||    
T  31908389 cttcataaaaatgagtgggtctattgtagcaaaccccatatatatatat 31908437  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 45358 - 45319
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  45358 aaaatgagtgggtctattgtagcaaac-cctatatatatat 45319  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 8683899 - 8683939
Alignment:
Q  37 aaaatgagtgggtctattgtaacaaactcctatatatatat 77  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  8683899 aaaatgagtgggtctattgtagcaaaaccctatatatatat 8683939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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