View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0690-Insertion-1 (Length: 518)
Name: NF0690-Insertion-1
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690-Insertion-1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 209 - 518
Target Start/End: Original strand, 33352302 - 33352612
Alignment:
| Q |
209 |
gttccactcaccattgaatattcagtcacggagttggtcctttcactactgactattaatgtttgtgtgaatattgcagttgtcatggacgtttgagaaa |
308 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33352302 |
gttccactcaacattgaatatccagtcacggagttggtcctttcactactgactattaatgtttgtgtgaatattgcagttgtcgtggacgtttgagaaa |
33352401 |
T |
|
| Q |
309 |
ggaggaatgacactgcattggagatggaaatgcatgaagtctcctgattgtaagaaaactactgcagaaatattggactttctcatggatgcaaacataa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33352402 |
ggaggaatgacactgcattggagatggaaatgcatgaagtctcctgattgtaagaaaactactgcagaaatattggactttctcatggatgcaaacataa |
33352501 |
T |
|
| Q |
409 |
ggcttagtgtaagataatactctgcttaac-nnnnnnnnagtgcattttccatacaggtaatttcaatcaacctctatgtttcgtgtttcttggtttatt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33352502 |
ggcttagtgtaagataatactctgcttaactttttttttagtgcattttccatacaggtaatttcaatcaacctctatgtttcgtgtttcttggtttatt |
33352601 |
T |
|
| Q |
508 |
cactatggtta |
518 |
Q |
| |
|
||||| ||||| |
|
|
| T |
33352602 |
cactaaggtta |
33352612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 33352069 - 33352304
Alignment:
| Q |
8 |
tgcggttacgttggggatcaaatatggttgatgtggcctcaatcgcagtcgcagagacagtgaaaaaactgatgttgcagttgtggacctttacttaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33352069 |
tgcggttacgttggggatcaaatatggttgatgtggcctcaatcgcagtcacagagacagtgaaaaaactgatgttgcagtcgtggacctttacttaaaa |
33352168 |
T |
|
| Q |
108 |
cgttaccaatacttttgtttttactccgatagatattccattggaaaatatcaaatcaattgtacaataattttataatattccattttttatatcatta |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33352169 |
ccttaccaatacttttgtttttactccgatagatattgcattggaaaatatcaaatcaattgtacaataattttataatattccattttaaatatcattc |
33352268 |
T |
|
| Q |
208 |
tgttccactcaccattgaatattcagtcacggagtt |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33352269 |
tgttccactcaccattgaatatccagtcacggagtt |
33352304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 28761917 - 28761964
Alignment:
| Q |
371 |
tgcagaaatattggactttctcatggatgcaaacataaggcttagtgt |
418 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
28761917 |
tgcagaaatattggaatttctcttggatacaaacataaggcttagtgt |
28761964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 957 times since January 2019
Visitors: 4362