View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690-Insertion-2 (Length: 389)
Name: NF0690-Insertion-2
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 59 - 389
Target Start/End: Original strand, 39881851 - 39882181
Alignment:
| Q |
59 |
cgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaacccacttccttcttctt |
158 |
Q |
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| T |
39881851 |
cgtgaaaccaaattcatagaggatagttttagtcatgcttatccttatgcacacctcaccgagacttagtcttagaaaactaacccacttccttcttctt |
39881950 |
T |
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| Q |
159 |
ttctaatatcttgcatgactcatcagcaaatgcaacaaccatctatcaggcccttatgctcacaccatctcctcccatattctctcaactttccatttat |
258 |
Q |
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| T |
39881951 |
ttctaatatctcgcatgactcatcagcaaatgcaacaaccatctatcaggtccttatgctcacacgatctcctcccatattctctcaactttccatttat |
39882050 |
T |
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| Q |
259 |
attcaaattctcatttacacacgtacaaacacttcacaaactttccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactcca |
358 |
Q |
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| T |
39882051 |
attcaaattctcatttacgcacgtacaaacacttcacaaactttccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactcca |
39882150 |
T |
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| Q |
359 |
cgttctcatcattcatacatctcattttagt |
389 |
Q |
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| T |
39882151 |
cgttctcatcattcatacatctcattttagt |
39882181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 387
Target Start/End: Complemental strand, 22640913 - 22640783
Alignment:
| Q |
263 |
aaattctcatttacacacgtacaaacacttcacaaactttcca------acttcacaaaatcaaactctaccaagaacaaacaaatgaacattctcactc |
356 |
Q |
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| T |
22640913 |
aaattctcagttacagacttacaaacacttcacaaacttcccattcccaacttcacaaaatcaaactctaccaagaacaaacaaatgaacactctcactc |
22640814 |
T |
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| Q |
357 |
cacgttctcatcattcatacatctcatttta |
387 |
Q |
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| T |
22640813 |
cactttcttgtcattcatacatctcatttta |
22640783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 2584046 - 2584008
Alignment:
| Q |
8 |
gacaatgcattatatatgcaagatccgggtttcaaatcc |
46 |
Q |
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| T |
2584046 |
gacaatgcattatatatgcaagatccgaggttcaaatcc |
2584008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40575648 - 40575607
Alignment:
| Q |
7 |
agacaatgcattatatatgcaagatccgggtttcaaatccta |
48 |
Q |
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| T |
40575648 |
agacaatgcataatatatgcaaggtccggggttcaaatccta |
40575607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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