View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690-Insertion-5 (Length: 266)
Name: NF0690-Insertion-5
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 36204557 - 36204292
Alignment:
| Q |
8 |
aatcatacttagttttaaggtttcgacgtttctttgcagatgggctgcactttttatcttgagcattgttgttctgacacttccgatcaataatctgaaa |
107 |
Q |
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| T |
36204557 |
aatcatacttagttttacggtttcgacgtttctttgcagatgggctgcactttatatcttgagcattgttgttctgacacttccgatcaataatctgaaa |
36204458 |
T |
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| Q |
108 |
acaacaatcaaagaacttaaattcttgtttacattaatttggttt-------nnnnnnnnnnnntctatataattctataccaaaacatcctttaacaat |
200 |
Q |
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| T |
36204457 |
acaacaatcaaagaacttaaattcttgtttacattaatttggttttaaaaaaaaaaaaaaaaaaactatataattctataccaaaacatcctttaacaat |
36204358 |
T |
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| Q |
201 |
tgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaaggattacatagca |
266 |
Q |
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| T |
36204357 |
tgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaaggattacatagca |
36204292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 11068327 - 11068407
Alignment:
| Q |
64 |
tcttgagcattgttgttctgacacttccgatcaataatctgaaaacaacaatcaaagaacttaaattcttgtttacattaa |
144 |
Q |
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| T |
11068327 |
tcttgtgcattgtcgttccaacacttcctatcaataatctgaaaacaacaatcaaataactttaagtcttgtttacattaa |
11068407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 11068470 - 11068504
Alignment:
| Q |
175 |
tctataccaaaacatcctttaacaattgatcacat |
209 |
Q |
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| T |
11068470 |
tctataccaaaacattctttaacaattgatcacat |
11068504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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