View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_high_2 (Length: 603)
Name: NF0690_high_2
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 52 - 598
Target Start/End: Complemental strand, 43191374 - 43190815
Alignment:
| Q |
52 |
gttatgttatgggtgttaaaagagcttggtagaattcaattcaatactactcctcaacaaaatttccaagttgaatgaagtctagaacatggtcaaattt |
151 |
Q |
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| T |
43191374 |
gttatgttatgggtgttaaaagagcttggtagaattcaattcaatactactcctcaacaaaatttccaagttgaatgaagtctagaacatggtcaaattt |
43191275 |
T |
|
| Q |
152 |
ttattgtttatatccc-acaaggaaa-cggattcagagtatgtgataagaaaaagtattacaagcaacttgctttctctatgcacaaatctcacaagttt |
249 |
Q |
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| T |
43191274 |
ttattgtttatatccccacaaggaaaacggattcagagtatgtgataagaaaaagtattacaagcaacttgctttctctatgcacaaatctcacaagttt |
43191175 |
T |
|
| Q |
250 |
catggtccaaat-----------gttgttaatacccacaagaaatactcatatttatcaatctgtttgaagaagtctctcccaataacaattgacacatg |
338 |
Q |
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| T |
43191174 |
catggtccaaattctccattaatgttgttaatacccacaagaaataatcatatttatcaatctgtttgaagaagtctctcccaataacaattgacacatg |
43191075 |
T |
|
| Q |
339 |
acaaaatttctcacaaatatttatcgtaatttttctctcatgtacatacagatacatttaatcttgcatgaaatatttattagtcaaaacatgtttgtaa |
438 |
Q |
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| T |
43191074 |
acaaaatttctcacaaatatttatcttaatttttctctcatgtacatacagatacatgtaatcttgcatgaaatatttattagtcaaaacatgtttgtaa |
43190975 |
T |
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| Q |
439 |
ttctgaccatttcaatactgtgcattagatgaaattgaagacttatcctaaatggataaaaatgtgtaccacccaactcaattctcgaactctacctatc |
538 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
43190974 |
ttctgaccatttcaatactgtgcattagatgaaattgaagacttatcctaaatggataaaaatgtttaccacccaactcaattctcgaactctaccaatc |
43190875 |
T |
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| Q |
539 |
ctgaaacaataccgtgtaccacccatgttctgatgtaactttatttttccctttgtttct |
598 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
43190874 |
ctgaaacaataccgtgtaccacccatattctgatgtaactttatttttctctttgtttct |
43190815 |
T |
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