View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0690_high_3 (Length: 442)
Name: NF0690_high_3
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 71 - 366
Target Start/End: Original strand, 39919385 - 39919681
Alignment:
| Q |
71 |
tcatgttttaaaatctacacaaatatattaagaaaaagataaataacaaaattgttatttttaatgtaaaagaagatgtgagttatctatctatcttccc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39919385 |
tcatgttttaaaatctacacaaatatattaagaaaaagataaataacaaaattgttatttttaatgtaaaagaagatgtgagttatctatctatcttccc |
39919484 |
T |
|
| Q |
171 |
aaggaagagaagttgtgaagtgaggg-atgataccgaactgtgttagagtaacaacagccacaaccatggctgttccttcattcatggcaatacgaagaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39919485 |
aaggaagagaagttgtgaagtgaggggatgataccgaactgtgttagagtaacaacagccacaaccatggctgttccttcattcatggcaatacgaagaa |
39919584 |
T |
|
| Q |
270 |
gacccatatgcttcttatgttgcgcttcttcttcaaccatcatcaatacagagcaattacgctctcaacttgatcatcttcatgctgaagcagatac |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39919585 |
gacccatatgcttcttatgttgcgcttcttcttcaaccatcatcaatacagagcaattacgttctcaacttgatcatcttcatgctgaagcagatac |
39919681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 544 times since January 2019
Visitors: 4385