View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_high_4 (Length: 347)
Name: NF0690_high_4
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 161 - 337
Target Start/End: Original strand, 10439498 - 10439675
Alignment:
| Q |
161 |
tcatggcgaatcaatctagcaccaaaggttcttcgtcgtcgaatcccgtggaatcgtacattggttgtttcataagcttgatttctaactacgaca-tcg |
259 |
Q |
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| T |
10439498 |
tcatggcgaatcaatctagcaccaaaggttcttcgtcgtcgaatcccgtggaatcgtacattggttgtttcataagcttgatttctaactacgacattcg |
10439597 |
T |
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| Q |
260 |
ttacgagggtgttctttatttccttaatgttcaggattctaccatcggattgaacaatggtatgttaaccgatctctg |
337 |
Q |
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| T |
10439598 |
ttacgagggtgttctttatttccttaatgttcaggattctaccatcggattgaacaatggtatgttaaccgatttctg |
10439675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 10439455 - 10439507
Alignment:
| Q |
92 |
ccatcttcaattcttcatcgctgttattttctcctctactctgtcatcgcgaa |
144 |
Q |
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| T |
10439455 |
ccatcttcaattcttcatcgctgttattttctcctctactctgtcatggcgaa |
10439507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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