View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0690_low_15 (Length: 306)

Name: NF0690_low_15
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0690_low_15
NF0690_low_15
[»] chr3 (13 HSPs)
chr3 (69-251)||(14249200-14249382)
chr3 (71-249)||(6437536-6437714)
chr3 (76-249)||(9263459-9263632)
chr3 (133-237)||(12744544-12744650)
chr3 (127-239)||(32970442-32970556)
chr3 (183-239)||(37836757-37836813)
chr3 (133-237)||(36097915-36098021)
chr3 (92-159)||(50240046-50240113)
chr3 (109-171)||(10020165-10020227)
chr3 (135-218)||(10974970-10975055)
chr3 (127-172)||(20779612-20779657)
chr3 (84-172)||(50241531-50241622)
chr3 (171-239)||(10022506-10022574)
[»] scaffold0191 (1 HSPs)
scaffold0191 (70-251)||(11552-11734)
[»] chr2 (7 HSPs)
chr2 (69-250)||(45055502-45055682)
chr2 (69-249)||(45659819-45659999)
chr2 (76-249)||(14873411-14873584)
chr2 (92-159)||(31967283-31967350)
chr2 (114-172)||(20106634-20106692)
chr2 (94-163)||(25547005-25547074)
chr2 (133-215)||(36727623-36727707)
[»] chr1 (6 HSPs)
chr1 (69-249)||(16853589-16853769)
chr1 (136-235)||(43385723-43385824)
chr1 (172-240)||(49879851-49879919)
chr1 (172-237)||(45920086-45920151)
chr1 (81-158)||(47783218-47783295)
chr1 (127-235)||(31089527-31089637)
[»] chr4 (9 HSPs)
chr4 (70-249)||(24181704-24181883)
chr4 (133-237)||(39976650-39976756)
chr4 (171-237)||(283736-283802)
chr4 (84-172)||(6554592-6554683)
chr4 (187-240)||(42727969-42728022)
chr4 (92-159)||(312895-312962)
chr4 (133-237)||(13230887-13230993)
chr4 (92-161)||(6552709-6552778)
chr4 (81-214)||(17675225-17675359)
[»] chr7 (4 HSPs)
chr7 (69-249)||(6190495-6190675)
chr7 (93-159)||(4109580-4109646)
chr7 (126-208)||(2929448-2929532)
chr7 (84-172)||(18290416-18290504)
[»] chr8 (13 HSPs)
chr8 (69-238)||(43216885-43217052)
chr8 (93-240)||(38291752-38291901)
chr8 (133-237)||(21587019-21587125)
chr8 (84-172)||(41526974-41527065)
chr8 (136-237)||(10900010-10900113)
chr8 (126-239)||(32916820-32916935)
chr8 (92-159)||(41528455-41528522)
chr8 (114-172)||(8358777-8358835)
chr8 (114-172)||(17888098-17888156)
chr8 (84-149)||(15276761-15276826)
chr8 (84-149)||(15457130-15457195)
chr8 (114-155)||(45246086-45246127)
chr8 (94-158)||(23283738-23283802)
[»] scaffold0216 (1 HSPs)
scaffold0216 (132-240)||(29159-29269)
[»] chr6 (4 HSPs)
chr6 (93-159)||(18089942-18090008)
chr6 (171-237)||(24360173-24360239)
chr6 (101-237)||(26595905-26596044)
chr6 (171-239)||(24410920-24410988)
[»] chr5 (4 HSPs)
chr5 (171-237)||(33012136-33012202)
chr5 (84-172)||(9025003-9025094)
chr5 (81-154)||(24539656-24539729)
chr5 (114-155)||(27592907-27592948)
[»] scaffold0061 (1 HSPs)
scaffold0061 (93-239)||(44880-45027)
[»] scaffold0017 (1 HSPs)
scaffold0017 (93-239)||(153760-153907)
[»] scaffold0284 (3 HSPs)
scaffold0284 (127-240)||(6411-6526)
scaffold0284 (92-159)||(2282-2349)
scaffold0284 (124-172)||(816-864)
[»] scaffold0211 (2 HSPs)
scaffold0211 (101-159)||(19908-19966)
scaffold0211 (84-172)||(18397-18488)
[»] scaffold0114 (2 HSPs)
scaffold0114 (108-170)||(1421-1483)
scaffold0114 (84-172)||(37091-37182)
[»] scaffold0021 (1 HSPs)
scaffold0021 (101-223)||(127565-127689)
[»] scaffold0074 (1 HSPs)
scaffold0074 (171-239)||(32690-32758)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 14249200 - 14249382
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249200 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 14249299  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgagtt 251  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14249300 tacttgcatctattgtggaactttaagtcacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgagtt 14249382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 6437714 - 6437536
Alignment:
Q  71 catcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatcta 170  Q
    |||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||  |||||    
T  6437714 catcgcaaagcacacaactgagattgacaccacatcatcactcaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatcta 6437615  T
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    |||||||| | | ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6437614 cttgcatccaatttggaactttgagtcacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 6437536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 9263632 - 9263459
Alignment:
Q  76 caaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctacttgc 175  Q
    ||||| |||||||||| ||||| || ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  9263632 caaagtacacaactgagattgacactacatcatcacccaaaactttaaatcattatgtatattgattatctcacttatatgtttttcaagatctacttgc 9263533  T
Q  176 atctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    ||| | | ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9263532 atccaatttggaactttgagtcacaattgacactttaacatctctcccataagtgtgagactcttgcgtatgag 9263459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 12744544 - 12744650
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatcta--cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtg 230  Q
    |||||||||||||||| ||||| || | |||   ||||  |||||||||| ||||||||||||| |||||||||| || |||||||||||| | ||| ||    
T  12744544 tatattggtcatctcatttataagtgtctcaacgtctactcttgcatctaatgtggaactttaaattacaattgatacattaacatatctctcttaattg 12744643  T
Q  231 tgagact 237  Q
    |||||||    
T  12744644 tgagact 12744650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 32970442 - 32970556
Alignment:
Q  127 attatgtatattggtcatctcacttatatgtttttcataatcta--cttgcatctattgtggaactttaagttacaattgacactttaacatatctccca 224  Q
    |||| |||||| ||||||||||||||||| |||||||  |||||  |||||||||| |||| |||||| | | ||| ||||||  ||||||||||||||     
T  32970442 attaggtatatgggtcatctcacttatatatttttcagcatctactcttgcatctaatgtgaaactttcactcacatttgacatattaacatatctccct 32970541  T
Q  225 taagtgtgagactct 239  Q
     || |||||||||||    
T  32970542 gaaatgtgagactct 32970556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 37836757 - 37836813
Alignment:
Q  183 gtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||||    
T  37836757 gtggaactttaacttacaagtgacacattaacatatctcccttaagtgtcagactct 37836813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 36098021 - 36097915
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatctactt--gcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtg 230  Q
    |||||||||||||||| ||||| || | |||  ||||||||  ||||||| |||| || ||||| |||||||||||||  ||||||||||| | ||| ||    
T  36098021 tatattggtcatctcatttataagtgtctcaacatctacttttgcatctaatgtgaaaatttaaattacaattgacacaataacatatctctcttaattg 36097922  T
Q  231 tgagact 237  Q
    |||||||    
T  36097921 tgagact 36097915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 50240113 - 50240046
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  50240113 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 50240046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 10020227 - 10020165
Alignment:
Q  109 cacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctac 171  Q
    ||||||||| |||||  ||||| ||||||  ||||||||||||||||||| |||| |||||||    
T  10020227 cacccaaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaaaatctac 10020165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 10974970 - 10975055
Alignment:
Q  135 tattggtcatctcacttatatgtttttcataatctacttg--catctattgtggaactttaagttacaattgacactttaacatat 218  Q
    |||||||||||| |||||||||||| | |  ||||||||   |||| | ||| ||||||||||||||||||||||| |||| ||||    
T  10974970 tattggtcatcttacttatatgtttctaaacatctactttgtcatccaatgtagaactttaagttacaattgacacattaaaatat 10975055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 20779657 - 20779612
Alignment:
Q  127 attatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    ||||||||| | |||||||||||||||||||| |||| ||||||||    
T  20779657 attatgtatttcggtcatctcacttatatgttgttcaaaatctact 20779612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 50241622 - 50241531
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaa---agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||| ||||   |||| |||||||||  ||||||||||||||||||| |||||||| ||||    
T  50241622 acaagtgagattgatatcacatattcacacaaaactttaagccagtagtatgtatatgagtcatctcacttatatgttattcataatttact 50241531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 10022574 - 10022506
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||||||| |||| |||||| ||| ||| ||||||  ||||||||||||||  || |||||||||||    
T  10022574 cttgcatctaatgtgaaactttcagtcacatttgacatattaacatatctccctgaaatgtgagactct 10022506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 11734 - 11552
Alignment:
Q  70 tcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgt-ttttcataatc 168  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  |||    
T  11734 tcatcacaaagcacacaactgagattgacaccacatcatcacccaaaaccttaaagtattatgtatattgatcatctcacttatatgttttttcaagatc 11635  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgagtt 251  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11634 tacttgcatatattgtggaactttaagtcacaattggcactttaacatatctcccataagtgtgagactctagcgtatgagtt 11552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 45055502 - 45055682
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    ||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||    
T  45055502 atcatcacaaagcacacaactaagattgacaccacatca-cacccaaaaccttaaagtattatgtatattggtcatctcacctatatgtttttcaagatc 45055600  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgagt 250  Q
    ||||||||||||| || ||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||||||||||||    
T  45055601 tacttgcatctatcgtagaactttaagtcacaatttgcactttaacatatctcccataagtgtgagagtcttgcgtatgagt 45055682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 45659999 - 45659819
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    |||||| |||||||||||| ||| ||||| |||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||  |||    
T  45659999 atcatcgcaaagcacacaattgagattgacaccacaccatcacccaaaaccttaaagcatcatgtatattgatcatctcacttatatgtttttcaagatc 45659900  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    |||||||||| | | || |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45659899 tacttgcatccaatttgtaactttgagtcacaattgacactttaacatctctcccataagtgtgagactcttgcgtatgag 45659819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 14873584 - 14873411
Alignment:
Q  76 caaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctacttgc 175  Q
    ||||| |||||||||| ||||| || ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  14873584 caaagtacacaactgagattgacactacatcatcacccaaaactttaaatcattatgtatattgattatctcacttatatgtttttcaagatctacttgc 14873485  T
Q  176 atctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    ||| | | ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14873484 atccaatttggaactttgagtcacaattgacactttaacatctctcccataagtgtgagactcttgcgtatgag 14873411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 31967283 - 31967350
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  31967283 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 31967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 20106634 - 20106692
Alignment:
Q  114 aaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    ||||||||||   ||||||||| ||||||||||||||||||| || |||| ||||||||    
T  20106634 aaaaccttaagacattatgtattttggtcatctcacttatattttattcaaaatctact 20106692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 25547074 - 25547005
Alignment:
Q  94 ttgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttca 163  Q
    |||| |||| ||| |||||  |||| |||| ||||||||||||| | |||| ||||||||||||||||||    
T  25547074 ttgacaccatatcttcaccataaacattaaggtattatgtatatagttcatatcacttatatgtttttca 25547005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 36727623 - 36727707
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatctactt--gcatctattgtggaactttaagttacaattgacactttaaca 215  Q
    |||||| |||||||||| ||||||||| | |  ||||||||  ||||||| |||| || ||||||| ||||||||||| ||||||    
T  36727623 tatattagtcatctcacatatatgtttcttaacatctacttttgcatctaatgtgaaattttaagtcacaattgacacattaaca 36727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 16853769 - 16853589
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||     
T  16853769 atcatcacaaagcacacaactgagattgacaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatt 16853670  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    |||||||||| | | || |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16853669 tacttgcatccaatttgaaactttgagtcacaattgacactttaacatctctcccataagtgtgagactcttgcgtatgag 16853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 43385723 - 43385824
Alignment:
Q  136 attggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtga 233  Q
    ||||||||||||| |||||||| | |||  |||||||  || || || ||||||||||||| | |||||||||| |||||||||||| || |||||||||    
T  43385723 attggtcatctcatttatatgtgtctcaacatctactgttgtatttaatgtggaactttaaatcacaattgacattttaacatatcttccttaagtgtga 43385822  T
Q  234 ga 235  Q
    ||    
T  43385823 ga 43385824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 49879919 - 49879851
Alignment:
Q  172 ttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactctt 240  Q
    ||||||||| ||||||||||||||| | ||| ||||| ||||||||||| || ||||||| ||||||||    
T  49879919 ttgcatctaatgtggaactttaagtcaaaatggacacattaacatatcttccttaagtgtaagactctt 49879851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 45920086 - 45920151
Alignment:
Q  172 ttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagact 237  Q
    ||||||||| ||||||||||||||| | ||| ||||| ||||||||||| || ||||||| |||||    
T  45920086 ttgcatctaatgtggaactttaagtcaaaatggacacattaacatatcttccttaagtgtaagact 45920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 47783295 - 47783218
Alignment:
Q  81 cacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtt 158  Q
    ||||||| ||| ||||| || ||||| |||||| ||||||||| | |||||||||||  ||||| |||||||||||||    
T  47783295 cacacaagtgagattgagactacatcttcaccctaaaccttaaggcattatgtatatgagtcatatcacttatatgtt 47783218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 31089527 - 31089637
Alignment:
Q  127 attatgtatattggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctccca 224  Q
    |||| |||||||| ||||||| ||||||||||  ||| ||| ||||  | |||| | ||| ||| ||||| |||||  |||||| ||||||||||||||     
T  31089527 attaggtatattgatcatctcgcttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaacatatctccct 31089626  T
Q  225 taagtgtgaga 235  Q
    |||||||||||    
T  31089627 taagtgtgaga 31089637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 24181704 - 24181883
Alignment:
Q  70 tcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatct 169  Q
    ||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  ||||    
T  24181704 tcatcacaaagcaaacaactgagattgacaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatct 24181803  T
Q  170 acttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    ||||||||| | | ||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  24181804 acttgcatccaatttggaactttgagtcacaattggcactttatcatctctcccataagtgtgagactcttgcgtatgag 24181883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 39976756 - 39976650
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtg 230  Q
    |||||||||||||||| ||||| || | |||  |||||||  |||||||| |||| || ||||| |||||||||||||  ||||||||||| | ||| ||    
T  39976756 tatattggtcatctcatttataagtgtctcaacatctactcttgcatctaatgtgaaaatttaaattacaattgacacaataacatatctctcttaattg 39976657  T
Q  231 tgagact 237  Q
    |||||||    
T  39976656 tgagact 39976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 283802 - 283736
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagact 237  Q
    |||||||||| ||||||||||||| ||||||| |||||  ||||||||||| | ||| |||||||||    
T  283802 cttgcatctaatgtggaactttaaattacaatcgacacaataacatatctctcttaattgtgagact 283736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 6554683 - 6554592
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaa---agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||||||||   |||| |||||||||  ||||||||||||||||||| |||| ||||||||    
T  6554683 acaattgagattgatatcacatattcacacaaaaccttaagccagtagtatgtatatgagtcatctcacttatatgttattcaaaatctact 6554592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 42727969 - 42728022
Alignment:
Q  187 aactttaagttacaattgacactttaacatatctcccataagtgtgagactctt 240  Q
    |||||||||| ||||||||||| |||||||||||| | ||| ||||||||||||    
T  42727969 aactttaagtaacaattgacacattaacatatctcacttaattgtgagactctt 42728022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 312962 - 312895
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  312962 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 312895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 13230993 - 13230887
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtg 230  Q
    |||||||||||||||| |||||||| | |||  |||||||  || ||||  |||| || ||||| | |||||| ||| |||||||||||| || ||||||    
T  13230993 tatattggtcatctcatttatatgtgtctcaacatctactattgtatcttatgtgaaattttaaatcacaattaacattttaacatatcttccttaagtg 13230894  T
Q  231 tgagact 237  Q
    |||||||    
T  13230893 tgagact 13230887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 6552778 - 6552709
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttttt 161  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||| ||||||    
T  6552778 aattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatacgttttt 6552709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 17675225 - 17675359
Alignment:
Q  81 cacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact--tgcatc 178  Q
    ||||||| |||  |||| |||||||| |||||| |||||||||   |||| |||||| ||| || ||||||||||||| ||||  ||||| |  ||||||    
T  17675225 cacacaagtgagtttgacaccacatcttcaccctaaaccttaagtcatta-gtatatgggttatatcacttatatgttgttcaacatctattaatgcatc 17675323  T
Q  179 tattgtggaactttaagttacaattgacactttaac 214  Q
     | ||||||||||||| | ||| ||||||| |||||    
T  17675324 caatgtggaactttaaatcacacttgacacgttaac 17675359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 6190675 - 6190495
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||| | ||| |||||||||||||||||  |||    
T  6190675 atcatcgcaaagcacacaactgagattgacaccacatcatcacccaaaatcttaaagcattatgtatattgataatcccacttatatgtttttcaagatc 6190576  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactcttgcgtatgag 249  Q
    |||||||||| | | ||||||||| ||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  6190575 tacttgcatccaatttggaactttgagtcacaattgacatttcaacatctctcccataagtgtgagactcttgcgtatgag 6190495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 4109580 - 4109646
Alignment:
Q  93 attgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    ||||| |||||||  |||||||||||||||||  |||| |||||||| || ||||||||||||||||    
T  4109580 attgacaccacattttcacccaaaaccttaaaacattaggtatattgttcgtctcacttatatgttt 4109646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 2929532 - 2929448
Alignment:
Q  126 tattatgtatattggtcatctcacttatatgtttttcataatctacttg--catctattgtggaactttaagttacaattgacac 208  Q
    ||||| |||| ||||||||||||| ||||||||| | |  ||||||||   |||||| ||||||||||||||| |||||||||||    
T  2929532 tattaggtatcttggtcatctcacatatatgtttcttaacatctacttttacatctaatgtggaactttaagtcacaattgacac 2929448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 18290416 - 18290504
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||| |||||||| | ||  ||||||||||   ||||||||| | |||||||||||||||||||| || | ||||||||    
T  18290416 acaagtgagattgacaccacatctttacataaaaccttaagacattatgtatttcggtcatctcacttatatgttgtttaaaatctact 18290504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 43216885 - 43217052
Alignment:
Q  69 atcatcacaaagcacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatc 168  Q
    |||||| |||| ||||||||||| ||||  ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||  |||    
T  43216885 atcatcgcaaaacacacaactgagattgtcaccacatcatcacccaaaatcttaaagcattatgtatattgatcatctcacttatatgtttttcaagatc 43216984  T
Q  169 tacttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactc 238  Q
    |||||||||| | | | ||||||| ||| ||||||||||||| |||  ||||||||||||||| ||||||    
T  43216985 tacttgcatccaatttagaactttgagtcacaattgacacttcaac--atctcccataagtgtaagactc 43217052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 38291901 - 38291752
Alignment:
Q  93 attgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaact 190  Q
    ||||| || ||||| ||| ||||||||||||   |||| |||||||| | || |||||||||||||| |||   || |||  |||||| | |||||||||    
T  38291901 attgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtttctcaatgtccactcttgcatcaaatgtggaact 38291802  T
Q  191 ttaagttacaattgacactttaacatatctcccataagtgtgagactctt 240  Q
    ||||||  |||||| ||| | || ||||||||| ||||||||||||||||    
T  38291801 ttaagtcgcaattgccacatcaatatatctcccttaagtgtgagactctt 38291752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 21587019 - 21587125
Alignment:
Q  133 tatattggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtg 230  Q
    |||||||||||||||| ||||| || | |||  |||||||  |||||||| |||| || ||||| |||||||||||||  ||||||||||| | ||| ||    
T  21587019 tatattggtcatctcatttataagtgtctcaacatctactcttgcatctaatgtgaaaatttaaattacaattgacacaataacatatctctcttaattg 21587118  T
Q  231 tgagact 237  Q
    |||||||    
T  21587119 tgagact 21587125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 41526974 - 41527065
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaa---agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||||||||   |||| |||||||||  ||||||||||||||||||| |||| ||||||||    
T  41526974 acaagtgagattgatatcacatattcacacaaaaccttaagccagtagtatgtatatgagtcatctcacttatatgttattcaaaatctact 41527065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 10900010 - 10900113
Alignment:
Q  136 attggtcatctcacttatatgtttttcataatctact--tgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtga 233  Q
    ||||||||||||| || ||||| | |||  |||||||  || ||||| ||||||||||||| | |||| ||||| |||||||||||| || |||| ||||    
T  10900010 attggtcatctcatttgtatgtgtctcaacatctactattgtatctaatgtggaactttaaatgacaactgacattttaacatatcttccttaagagtga 10900109  T
Q  234 gact 237  Q
    ||||    
T  10900110 gact 10900113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 32916935 - 32916820
Alignment:
Q  126 tattatgtatattggtcatctcacttatatgtttttcataatc--tacttgcatctattgtggaactttaagttacaattgacactttaacatatctccc 223  Q
    ||||| ||||||||||||||||| |||||||||  |||| |||  || || |||| | |||| |||| ||||| ||| ||||||| ||| ||| ||||||    
T  32916935 tattaggtatattggtcatctcagttatatgttgctcattatctatatttacatccaatgtgaaactctaagtcacatttgacacattagcatctctccc 32916836  T
Q  224 ataagtgtgagactct 239  Q
     ||| |||||||||||    
T  32916835 ttaaatgtgagactct 32916820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 41528455 - 41528522
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  41528455 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 41528522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 8358777 - 8358835
Alignment:
Q  114 aaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    ||||||||||   ||||||||| | |||||||||||||||||||| |||| ||||||||    
T  8358777 aaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctact 8358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 17888156 - 17888098
Alignment:
Q  114 aaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    ||||||||||   ||||||||| | |||||||||||||||||||| |||| ||||||||    
T  17888156 aaaaccttaagacattatgtatttcggtcatctcacttatatgttgttcaaaatctact 17888098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 15276761 - 15276826
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcac 149  Q
    |||| ||| ||||| |||||||| ||||| ||||||||||   |||||||||||| ||||||||||    
T  15276761 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcac 15276826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 15457130 - 15457195
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcac 149  Q
    |||| ||| ||||| |||||||| ||||| ||||||||||   |||||||||||| ||||||||||    
T  15457130 acaagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcac 15457195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 45246127 - 45246086
Alignment:
Q  114 aaaaccttaaagtattatgtatattggtcatctcacttatat 155  Q
    |||||||||||| |||||||||||  ||||||||||||||||    
T  45246127 aaaaccttaaagcattatgtatatgagtcatctcacttatat 45246086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 23283802 - 23283738
Alignment:
Q  94 ttgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtt 158  Q
    |||| |||||||| |||||| |||| |||| ||| || ||||||||||||| ||| |||||||||    
T  23283802 ttgacaccacatcttcaccctaaacattaaggtaataggtatattggtcatatcatttatatgtt 23283738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 29159 - 29269
Alignment:
Q  132 gtatattggtcatctcacttatatgtttttcataatctactt--gcatctattgtggaactttaagttacaattgacactttaacatatctcccataagt 229  Q
    |||||||| |||||||||||||||||| || |  ||||||||  ||||| | ||||||||||||| | ||| |||| || |||||||||||||| ||| |    
T  29159 gtatattgatcatctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacatatctcccttaact 29258  T
Q  230 gtgagactctt 240  Q
    |||||||||||    
T  29259 gtgagactctt 29269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 18089942 - 18090008
Alignment:
Q  93 attgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    ||||| |||||||| |||||||||||||||| | |||| |||||||| |||||||| ||||||||||    
T  18089942 attgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgttt 18090008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 24360173 - 24360239
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagact 237  Q
    |||||||| ||||||||||||||||| | ||||||||| ||||||||| |||  | |||||||||||    
T  24360173 cttgcatccattgtggaactttaagtcaaaattgacacattaacatatttcctttcagtgtgagact 24360239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 26595905 - 26596044
Alignment:
Q  101 cacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctactt--gcatctattgtggaactttaagtta 198  Q
    |||||||||| ||||||||||||   |||| ||  ||||||||||| |||||||||||| | |  ||||||||   |||| | ||| ||||||||||| |    
T  26595905 cacatcatcatccaaaaccttaagacattaggtgcattggtcatcttacttatatgtttctaaacatctactttgacatccaatgtagaactttaagtca 26596004  T
Q  199 caattgacactttaacatatctccc-ataagtgtgagact 237  Q
    |||||||||  | ||||||| ||||  |||||||||||||    
T  26596005 caattgacatatcaacatatgtccctttaagtgtgagact 26596044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 24410988 - 24410920
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||||||| ||| |||||| |||  | ||||||||| |||||||||||| | || ||||||||||||    
T  24410988 cttgcatctaatgtagaacttcaagccataattgacacattaacatatctcacttatgtgtgagactct 24410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 33012136 - 33012202
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagact 237  Q
    |||||||||| ||||||||||||| |||||||||||||  ||||||||||| | ||| |||||||||    
T  33012136 cttgcatctaatgtggaactttaaattacaattgacacaataacatatctctcttaattgtgagact 33012202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 9025094 - 9025003
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaa---agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||||||||   |||| |||||||||  ||||||||||||||||||| |||| ||||||||    
T  9025094 acaagtgagattgatatcacatattcacacaaaaccttaagccagtagtatgtatatgagtcatctcacttatatgttattcaaaatctact 9025003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 24539729 - 24539656
Alignment:
Q  81 cacacaactgaaattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttata 154  Q
    ||||||| ||| ||||| | |||||| |||||||||  |||||||||||| ||||||  ||||||| |||||||    
T  24539729 cacacaagtgagattgacaacacatcttcacccaaagtcttaaagtattaggtatatgagtcatcttacttata 24539656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 27592907 - 27592948
Alignment:
Q  114 aaaaccttaaagtattatgtatattggtcatctcacttatat 155  Q
    |||||||||||| |||||||||||  ||||||||||||||||    
T  27592907 aaaaccttaaagcattatgtatatgagtcatctcacttatat 27592948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 44880 - 45027
Alignment:
Q  93 attgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatcta--cttgcatctattgtggaact 190  Q
    ||||| |||||||| ||||| |||||| ||| | |||| |||||||| ||||||||||||||| ||| |||  |||||  ||| || | | | | |||||    
T  44880 attgacaccacatcttcaccaaaaaccataaggcattaggtatattgttcatctcacttatatatttctcaacatctactctttcaacaaatatagaact 44979  T
Q  191 ttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||| ||||||||||  |||||||||||| | ||||||| |||||||    
T  44980 ttaagtgacaattgacatattaacatatctctc-taagtgtaagactct 45027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 153907 - 153760
Alignment:
Q  93 attgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatcta--cttgcatctattgtggaact 190  Q
    ||||| |||||||| ||||| |||||| ||| | |||| |||||||| ||||||||||||||| ||| |||  |||||  ||| || | | | | |||||    
T  153907 attgacaccacatcttcaccaaaaaccataaggcattaggtatattgttcatctcacttatatatttctcaacatctactctttcaacaaatatagaact 153808  T
Q  191 ttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||| ||||||||||  |||||||||||| | ||||||| |||||||    
T  153807 ttaagtgacaattgacatattaacatatctctc-taagtgtaagactct 153760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 6411 - 6526
Alignment:
Q  127 attatgtatattggtcatctcacttatatgtttttcataatcta--cttgcatctattgtggaactttaagttacaattgacactttaacatatctccca 224  Q
    |||| ||||||||||||||||||||||||||| ||||  |||||   ||||||| | | ||||||||||| | ||| |||| || ||||||  ||||||     
T  6411 attaggtatattggtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaacacctctccct 6510  T
Q  225 taagtgtgagactctt 240  Q
    ||| ||||||| ||||    
T  6511 taattgtgagaatctt 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 2282 - 2349
Alignment:
Q  92 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  2282 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 816 - 864
Alignment:
Q  124 agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| |||||||||  ||||||||||||||||||| |||| ||||||||    
T  816 agtaatatgtatatgagtcatctcacttatatgttattcaaaatctact 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 19908 - 19966
Alignment:
Q  101 cacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 159  Q
    |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  19908 cacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 19966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 18397 - 18488
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaaa---gtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||||||||    ||| |||||||||  ||||||||||||||||||| |||| ||||||||    
T  18397 acaagtgagattgatatcacatattcacacaaaaccttaagcctgtagtatgtatatgagtcatctcacttatatgttattcaaaatctact 18488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 1483 - 1421
Alignment:
Q  108 tcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatcta 170  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||||||| || |||| ||||||    
T  1483 tcactcaaaaccctaaggtattaggtatatgggtcatctcacttatatattattcaaaatcta 1421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 37182 - 37091
Alignment:
Q  84 acaactgaaattgataccacatcatcacccaaaaccttaa---agtattatgtatattggtcatctcacttatatgtttttcataatctact 172  Q
    |||| ||| ||||||| |||||  |||| |||||||||||   |||| |||||||||   |||||||||||||||||| |||| ||||||||    
T  37182 acaagtgagattgatatcacatattcacacaaaaccttaagctagtagtatgtatatgaatcatctcacttatatgttattcaaaatctact 37091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 127565 - 127689
Alignment:
Q  101 cacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgtttttcataatctactt--gcatctattgtggaactttaagtta 198  Q
    ||||||||||  ||| |||||||   |||| || |||||||||||| |||||||||||| | |  ||||||||   |||| | ||| ||||||||||| |    
T  127565 cacatcatcattcaagaccttaagacattaggtgtattggtcatcttacttatatgtttctaaacatctactttatcatccaatgtagaactttaagtca 127664  T
Q  199 caattgacactttaacatatctccc 223  Q
    |||||||||| |||| |||| ||||    
T  127665 caattgacacattaaaatatatccc 127689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 32758 - 32690
Alignment:
Q  171 cttgcatctattgtggaactttaagttacaattgacactttaacatatctcccataagtgtgagactct 239  Q
    |||||||||| ||| |||||| |||  | ||||||||| |||||||||||| | || ||||||||||||    
T  32758 cttgcatctaatgtagaacttcaagccataattgacacattaacatatctcacttatgtgtgagactct 32690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 774 times since January 2019
Visitors: 4393