View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_low_17 (Length: 278)
Name: NF0690_low_17
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 32183229 - 32183462
Alignment:
| Q |
41 |
caaatattagtagttagttgttagattagnnnnnnnncttctttatccaggtttgaacgttgtgatcaatttcacatagataattaatctacaatggcta |
140 |
Q |
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| T |
32183229 |
caaatattagtagttagttgttagattagttttttttcttctttatccgggtttgaacgttgtgatcaatttcacatagataat----ctacaatagcta |
32183324 |
T |
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| Q |
141 |
aagaaagttgttcctttgcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttcccttaat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183325 |
aagaaagttgttcctttgcaggaactaagtggaagtaaattgcaagctgattcaaattctataccactagttttccatgaggtacacatcttcccttaat |
32183424 |
T |
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| Q |
241 |
ttcagtagatatattatatattgcatcactgtgaattt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32183425 |
ttcagtagatatattatatattgcatcactgtgaattt |
32183462 |
T |
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