View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0690_low_2 (Length: 706)

Name: NF0690_low_2
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0690_low_2
NF0690_low_2
[»] chr1 (13 HSPs)
chr1 (29-499)||(17653176-17653634)
chr1 (55-491)||(47050324-47050747)
chr1 (165-491)||(14660026-14660344)
chr1 (177-491)||(16100706-16101013)
chr1 (165-491)||(14650235-14650553)
chr1 (179-491)||(29288999-29289312)
chr1 (89-257)||(17478575-17478739)
chr1 (39-257)||(263007-263221)
chr1 (297-491)||(19657461-19657649)
chr1 (159-225)||(17981719-17981786)
chr1 (177-226)||(19657319-19657369)
chr1 (177-224)||(16104423-16104471)
chr1 (55-139)||(29288023-29288106)
[»] chr6 (19 HSPs)
chr6 (29-499)||(22013924-22014381)
chr6 (84-491)||(25478096-25478491)
chr6 (150-489)||(28040664-28040996)
chr6 (165-491)||(27527203-27527531)
chr6 (177-491)||(33055601-33055905)
chr6 (155-380)||(27684088-27684314)
chr6 (155-380)||(27691407-27691633)
chr6 (177-358)||(33063205-33063384)
chr6 (150-491)||(27650961-27651295)
chr6 (100-490)||(15970279-15970657)
chr6 (155-320)||(17357635-17357801)
chr6 (165-374)||(6952290-6952498)
chr6 (385-491)||(33062984-33063090)
chr6 (35-255)||(16693948-16694165)
chr6 (165-251)||(9815053-9815140)
chr6 (315-488)||(17355375-17355540)
chr6 (155-233)||(13141996-13142075)
chr6 (177-251)||(30130534-30130609)
chr6 (55-139)||(25477853-25477936)
[»] chr2 (12 HSPs)
chr2 (29-499)||(44324032-44324489)
chr2 (150-438)||(45332676-45332956)
chr2 (155-488)||(31713836-31714161)
chr2 (155-380)||(39154633-39154860)
chr2 (150-337)||(808579-808765)
chr2 (409-490)||(2588117-2588198)
chr2 (165-257)||(4406347-4406440)
chr2 (400-499)||(808810-808909)
chr2 (165-250)||(9311064-9311150)
chr2 (434-491)||(45331962-45332019)
chr2 (177-233)||(10416155-10416212)
chr2 (177-251)||(4698095-4698170)
[»] chr3 (10 HSPs)
chr3 (84-491)||(19434968-19435363)
chr3 (165-499)||(28103769-28104096)
chr3 (165-499)||(28068794-28069116)
chr3 (165-499)||(28058369-28058691)
chr3 (166-491)||(6911242-6911564)
chr3 (309-452)||(11200699-11200834)
chr3 (160-251)||(17954693-17954784)
chr3 (162-223)||(23397923-23397984)
chr3 (150-224)||(9436001-9436076)
chr3 (177-233)||(5705490-5705547)
[»] chr5 (6 HSPs)
chr5 (150-499)||(5519373-5519712)
chr5 (150-489)||(42785455-42785783)
chr5 (150-251)||(15599016-15599117)
chr5 (312-491)||(15598659-15598829)
chr5 (317-374)||(27198374-27198431)
chr5 (167-257)||(27198198-27198289)
[»] chr4 (15 HSPs)
chr4 (55-438)||(27560947-27561317)
chr4 (165-491)||(4763405-4763727)
chr4 (150-373)||(11512701-11512925)
chr4 (150-240)||(51533841-51533930)
chr4 (150-240)||(18694128-18694217)
chr4 (166-251)||(27733593-27733678)
chr4 (160-260)||(5358535-5358635)
chr4 (155-257)||(54351775-54351876)
chr4 (434-499)||(27561332-27561397)
chr4 (277-348)||(8164473-8164542)
chr4 (316-372)||(5358666-5358722)
chr4 (399-491)||(11512948-11513039)
chr4 (399-489)||(5358734-5358824)
chr4 (544-590)||(40383358-40383404)
chr4 (322-438)||(54351969-54352078)
[»] chr8 (7 HSPs)
chr8 (150-491)||(18982382-18982714)
chr8 (150-489)||(4706552-4706877)
chr8 (160-373)||(28603022-28603234)
chr8 (150-487)||(26917241-26917567)
chr8 (161-374)||(26340387-26340602)
chr8 (165-351)||(15925033-15925219)
chr8 (409-499)||(15924891-15924982)
[»] scaffold0406 (1 HSPs)
scaffold0406 (55-491)||(3615-4035)
[»] scaffold0007 (1 HSPs)
scaffold0007 (29-491)||(60505-60956)
[»] scaffold0438 (2 HSPs)
scaffold0438 (161-489)||(7563-7884)
scaffold0438 (161-374)||(10548-10763)
[»] scaffold0713 (1 HSPs)
scaffold0713 (165-380)||(780-995)
[»] scaffold0012 (2 HSPs)
scaffold0012 (29-139)||(233369-233479)
scaffold0012 (154-231)||(182811-182889)
[»] scaffold0002 (3 HSPs)
scaffold0002 (149-257)||(412872-412980)
scaffold0002 (149-224)||(406869-406944)
scaffold0002 (160-257)||(424255-424352)
[»] chr7 (7 HSPs)
chr7 (160-257)||(36264128-36264224)
chr7 (165-351)||(28803653-28803838)
chr7 (297-373)||(36264288-36264365)
chr7 (165-239)||(44060056-44060131)
chr7 (400-499)||(28803513-28803613)
chr7 (159-231)||(29466909-29466983)
chr7 (279-359)||(29467028-29467106)
[»] scaffold0036 (1 HSPs)
scaffold0036 (168-257)||(31705-31792)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 29 - 499
Target Start/End: Original strand, 17653176 - 17653634
Alignment:
Q  29 aaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgc 128  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||| || ||||    
T  17653176 aaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatgtgacgccgctgagcttcgagtctactagcagctttctactcagctgc 17653275  T
Q  129 ttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaaggg 228  Q
    ||||||||||||         ||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17653276 ttgaaaatctggaaaaaaa--atagaaagagaaagagtaagtcgcaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaaggg 17653373  T
Q  229 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattca 328  Q
    ||||| |||||||| |||||||||||||||||||| |||  |||||||||||| ||||||||||||||||  ||| |||||||| |||||||||||||||    
T  17653374 cacgattatttattcttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataataacctcacaatcaagtgtaccatgaaaattca 17653473  T
Q  329 taaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataa 428  Q
    ||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || ||||||||||||||||| ||    
T  17653474 taaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaaaa 17653563  T
Q  429 tatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||| || |||||||    
T  17653564 tatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 17653634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 55 - 491
Target Start/End: Original strand, 47050324 - 47050747
Alignment:
Q  55 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntataga 154  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||          |||||    
T  47050324 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa----ataga 47050418  T
Q  155 aaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatct 254  Q
    |||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  47050419 aaataaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctcaaatct 47050518  T
Q  255 aatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacca 354  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  47050519 aatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaacca 47050618  T
Q  355 aataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaagg 454  Q
    ||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  47050619 aataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaagg 47050710  T
Q  455 aatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    ||||||||| || |||| ||||| |||||||||||||    
T  47050711 aatcgagataatcaaatccaaatagaatataaaaatc 47050747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 165 - 491
Target Start/End: Complemental strand, 14660344 - 14660026
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  14660344 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgattattttttttt-tcaaatctaatttttaa 14660246  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
    ||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| | |    
T  14660245 cttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatcaaaccaaataagact 14660146  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
    |||||||||||||        ||||| ||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14660145 atatcaaaatttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagat 14660054  T
Q  464 gattaaattcaaattgaatataaaaatc 491  Q
     || |||| ||||| |||||||||||||    
T  14660053 aatcaaatccaaatagaatataaaaatc 14660026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 177 - 491
Target Start/End: Complemental strand, 16101013 - 16100706
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgaggcta 275  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |  ||||||    
T  16101013 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatggtcacgattatttatttttctcaaatctaatttttaactaacaaggcta 16100914  T
Q  276 gtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaattt 375  Q
    |||||  ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  16100913 gtaactgtataaaaatataataaattcacaatcaagtgtaccatgagaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaattt 16100814  T
Q  376 caatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaa 475  Q
    |        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| |||    
T  16100813 c--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaa 16100722  T
Q  476 attgaatataaaaatc 491  Q
    || |||||||||||||    
T  16100721 atagaatataaaaatc 16100706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 165 - 491
Target Start/End: Complemental strand, 14650553 - 14650235
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  14650553 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgattattttttttt-tcaaatctaatttttaa 14650455  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
    ||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| | |    
T  14650454 cttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgataattcataaaactttttaattttatcaaaccaaataagact 14650355  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
    |||||||||||||        ||||| ||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14650354 atatcaaaatttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagat 14650263  T
Q  464 gattaaattcaaattgaatataaaaatc 491  Q
      | |||| ||||| |||||||||||||    
T  14650262 agtcaaatccaaatagaatataaaaatc 14650235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 179 - 491
Target Start/End: Original strand, 29288999 - 29289312
Alignment:
Q  179 cttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgag------- 271  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||           
T  29288999 cttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctcaaatctaatttttaacttacaagacttaca 29289098  T
Q  272 --gctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatca 369  Q
      |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||    
T  29289099 aggctagtaaccgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactataaca 29289198  T
Q  370 aaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaa 469  Q
    |||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| || ||    
T  29289199 aaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaattgattataatgaaaaggaatcgagataatcaa 29289290  T
Q  470 attcaaattgaatataaaaatc 491  Q
    || ||||| |||||||| ||||    
T  29289291 atccaaatagaatataacaatc 29289312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 17478575 - 17478739
Alignment:
Q  89 gctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgaga 188  Q
    ||||| ||| |||||||||||||||| || ||  | ||||||||||||||||         |||||||| || ||||||||| |||||||||||||||||    
T  17478575 gctgaactttgagtctactagcagctctccacttagctgcttgaaaatctggaaaaaa---atagaaaatgagagagtaagtcacaaggacttagtgaga 17478671  T
Q  189 gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||  |||||||||||||||    
T  17478672 gacaacaaccaccaccaactagaagggaaacgcacaagggcacgattattta-ctttctcaaatctaat 17478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 263221 - 263007
Alignment:
Q  39 taagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatct 138  Q
    |||| |||||||||| ||||||||| |||||||||| ||||||| |||||||||| | | |||||||||||||||||||||| || |||  ||  |||||    
T  263221 taagcaaaagagtcgtccatcaaggtggcctaccaa-aaaatgtgacactgctgaaccttgagtctactagcagctttctactcagctgtgtgggaatct 263123  T
Q  139 ggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtga-gagacaacaactaccaccaactaaaagggaaacacacaagggcacgactat 237  Q
    |          |||||||| |||||||||||  ||||||||||||||| ||||||||||| |||||| |||| |||||||||| | | |||||||| ||     
T  263122 g----aaaaaaatagaaaacgaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacatatatgggcacgagtaa 263027  T
Q  238 ttatttttctcaaatctaat 257  Q
    |||  |||||| ||||||||    
T  263026 ttaagtttctcgaatctaat 263007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 491
Target Start/End: Original strand, 19657461 - 19657649
Alignment:
Q  297 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaa 395  Q
    ||||||| |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||        |  |||||||| ||    
T  19657461 aaattcacaatcaagtgtatacatgaaaattcaaaaaactttgtaaatttatcaaaccaaataagattatatcgaaat--------cccaatgttgtaaa 19657552  T
Q  396 gaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgat-taaattcaaattgaatataaaaatc 491  Q
    ||||| || ||| |||| |||| ||||||| ||||||||||||    ||||||||||||||| || || ||  |||| ||||| |||||||||||||    
T  19657553 gaggtcaacccaaatccgcaaccttaaagaaaatatagaaatcacacataatgaaaaggaattgaaataatagaaatccaaatagaatataaaaatc 19657649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 17981719 - 17981786
Alignment:
Q  159 gaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaa 225  Q
    |||||||||||| |||| |||||| |||| |||||||||  ||||||||||| |||||||||||||||    
T  17981719 gaaagagtaagtcacaaagacttattgaggagacaacaatcaccaccaactagaagggaaacacacaa 17981786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 19657319 - 19657369
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaag 226  Q
    ||||||||||| |||||||||  ||||||||||| ||||||||||||||||    
T  19657319 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaag 19657369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 16104471 - 16104423
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacaca 224  Q
    ||||||||||| |||||||||  ||||||||||| ||||||||||||||    
T  16104471 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacaca 16104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 29288023 - 29288106
Alignment:
Q  55 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctg 139  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| |||||||||||| |||||||||  | |||||||||||||||    
T  29288023 ccatcaaagaagcctaccaaaaaga-gtgacacagctgaactttgagtctactagctgctttctacttagctgcttgaaaatctg 29288106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 499
Target Start/End: Complemental strand, 22014381 - 22013924
Alignment:
Q  29 aaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgc 128  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| || | | |||||||||||||||||||||||||||||| || ||||    
T  22014381 aaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatgtgacgccgttgagcttcgagtctactagcagctttctactcagctgc 22014282  T
Q  129 ttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaaggg 228  Q
    ||||||||||||         ||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  22014281 ttgaaaatctggaaaaaa---atagaaagagaaagagtaagtcgcaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaaggg 22014185  T
Q  229 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattca 328  Q
    ||||| |||||||| |||||||||||||||||||| |||  || ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||    
T  22014184 cacgattatttattcttctcaaatctaatttttaatttacaagactagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattca 22014085  T
Q  329 taaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataa 428  Q
    ||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || ||||||||||||||||| ||    
T  22014084 taaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaaaa 22013995  T
Q  429 tatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    ||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||| || |||||||    
T  22013994 tatagaaatcgattataatgaaaagaaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 22013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 84 - 491
Target Start/End: Original strand, 25478096 - 25478491
Alignment:
Q  84 acactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttag 183  Q
    |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||          ||||||||  ||||||||||| ||||||||||||    
T  25478096 acacggctgaactttgagtctactagcagcttcctacgtagctgcttgaaaatctgaaaaaa----atagaaaataaaagagtaagtcacaaggacttag 25478191  T
Q  184 tgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccat 283  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||  |||||||||||  |    
T  25478192 tgagagacaacaaccactaccaactagaagggaaacacacaagggcacgattttttacttttctcaaatataatttttaacttacaaggctagtaactgt 25478291  T
Q  284 ataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgaca 383  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||           
T  25478292 ataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaacttcgtaattttatcaaaccaaataagactatatcaaaatttc------- 25478384  T
Q  384 aaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaata 483  Q
     ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||    
T  25478385 -aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaata 25478483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 150 - 489
Target Start/End: Complemental strand, 28040996 - 28040664
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  28040996 atagaaaataaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaaggacacgattatttatttttctca 28040897  T
Q  250 aatctaatttttaacttatgaggctagtaaccatat-aaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatc 348  Q
    ||||||||||||||||||  |||||||||||  ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  28040896 aatctaatttttaacttacaaggctagtaactgtataaaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 28040797  T
Q  349 aaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg 448  Q
    |||| |||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  28040796 aaactaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatg 28040705  T
Q  449 aaaaggaatcgagatgattaaattcaaattgaatataaaaa 489  Q
    ||||||||||||||| || |||| |||||  ||||||||||    
T  28040704 aaaaggaatcgagataatcaaatccaaatataatataaaaa 28040664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 165 - 491
Target Start/End: Complemental strand, 27527531 - 27527203
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttattttt---------ctcaaatct 254  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| | ||| |||||         |||||||||    
T  27527531 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgaatttttttttttttttcttttctcaaatct 27527432  T
Q  255 aatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacca 354  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  27527431 aatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatcaaacca 27527332  T
Q  355 aataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaagg 454  Q
    ||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  27527331 aataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaagg 27527240  T
Q  455 aatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    ||||||||| || |||| ||||| |||||||||||||    
T  27527239 aatcgagataatcaaatccaaatagaatataaaaatc 27527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 177 - 491
Target Start/End: Complemental strand, 33055905 - 33055601
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgaggcta 275  Q
    ||||||||||| |||||||||  |||||||| || |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  33055905 gacttagtgaggagacaacaatcaccaccaaatagaagggaaacacatatgggcacgattatttatttttctcaaatctaatttttaacttacaaggcta 33055806  T
Q  276 gtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaattt 375  Q
     ||||   |||||||||||||||||||| |   |||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  33055805 ataactgaataaaaatataataaattcaca---aagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaattt 33055709  T
Q  376 caatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaa 475  Q
    |        ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| |||    
T  33055708 c--------aatgttgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaa 33055617  T
Q  476 attgaatataaaaatc 491  Q
    || |||||||||||||    
T  33055616 atagaatataaaaatc 33055601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 155 - 380
Target Start/End: Complemental strand, 27684314 - 27684088
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatc 253  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  27684314 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctcaaatc 27684215  T
Q  254 taatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacc 353  Q
    ||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| | |||| || ||||||||    
T  27684214 taatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcgtaacttaatcaaacc 27684115  T
Q  354 aaataatattatatcaaaatttcaatg 380  Q
    |||||| | ||||| |||||| |||||    
T  27684114 aaataaaagtatattaaaattccaatg 27684088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 155 - 380
Target Start/End: Complemental strand, 27691633 - 27691407
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatc 253  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  27691633 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctcaaatc 27691534  T
Q  254 taatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacc 353  Q
    ||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| |  ||| || ||||||||    
T  27691533 taatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcttaacttaatcaaacc 27691434  T
Q  354 aaataatattatatcaaaatttcaatg 380  Q
    |||||| | ||||| |||||| |||||    
T  27691433 aaataaaagtatattaaaattccaatg 27691407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 177 - 358
Target Start/End: Complemental strand, 33063384 - 33063205
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgaggcta 275  Q
    ||||||||||| |||||||||  |||||||| || || |||||||| || |||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  33063384 gacttagtgaggagacaacaatcaccaccaaatagaatggaaacacgcatgggcacgattatttatttttctcaaatctaatttttaacttacaaggcta 33063285  T
Q  276 gtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaata 358  Q
    |||||  ||||||||||||||||||||| |   |||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  33063284 gtaactgtataaaaatataataaattcaca---aagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaata 33063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 150 - 491
Target Start/End: Complemental strand, 27651295 - 27650961
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||| ||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| || |||| | |||||  ||||||||    
T  27651295 atagaaaataaaatagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaaaggaaacacacgagagcacaattattttattttctca 27651196  T
Q  250 aatctaatttttaacttatgaggctagtaaccatat-aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaattta 346  Q
    ||||| ||||| || |||  | ||| |||| | | | |||||||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||||    
T  27651195 aatctgatttt-aatttacaaagcttgtaatcgttttaaaaatataataaattcacaatcaagagtataccatgaaaattcagaaaattttgtaaattta 27651097  T
Q  347 tcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataa 446  Q
    ||||| ||||||||| ||||||||||| |||||         ||   |||||||||| ||| ||| ||||||||||||  ||||||||||||   |||||    
T  27651096 tcaaatcaaataatactatatcaaaatatcaat---------ttcgtaagaggtgaatccaaatcaacaactttaaaggaaatatagaaatcatgtataa 27651006  T
Q  447 tgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    |||||||||||| | || || |||| ||||| || ||||| ||||    
T  27651005 tgaaaaggaatccaaataatcaaatccaaatagactataacaatc 27650961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 100 - 490
Target Start/End: Original strand, 15970279 - 15970657
Alignment:
Q  100 agtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaacta 199  Q
    |||||||||||||||||||||  ||||||||| |||||||          ||||||||  ||||| ||||| |||||||||||||||||||||||||| |    
T  15970279 agtctactagcagctttctacttaactgcttggaaatctgaagaaaata-atagaaaataaaagaataagtcacaaggacttagtgagagacaacaacca 15970377  T
Q  200 ccaccaactaaaagggaaacacacaagggcacgactat-ttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataa 298  Q
    |||||||||| ||||| ||||||||||||||||| ||  ||| ||||||||||||||||||| || |||  |   ||||| || |||||||||||||| |    
T  15970378 ccaccaactagaagggcaacacacaagggcacgattaaattacttttctcaaatctaatttt-aatttacaaa--tagtacccgtataaaaatataatca 15970474  T
Q  299 attcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagag 398  Q
    | |||||||| ||| |||| |||||||||  |||||||||||| ||||||||||||||||| | || ||||||||  ||||| |        ||  | ||    
T  15970475 actcataatctagtgtaccttgaaaattcggaaaactttgtaactttatcaaaccaaataagactacatcaaaatcgcaatgtc--------gtacaaag 15970566  T
Q  399 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaat 490  Q
    ||||| ||| ||||||||||||||  | ||||||||||||    |||||||||||| ||||| || || |||| ||||| ||||||||||||    
T  15970567 gtgaacccaaatccacaactttaattagaatatagaaatcatccataatgaaaagg-atcgaaataatcaaatccaaatcgaatataaaaat 15970657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 17357801 - 17357635
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatc 253  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||| |||||||||||||||||| |||||||||||||||||||    
T  17357801 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaaggaaaacacacaagggcacgattatttatttttctcaaatc 17357702  T
Q  254 taatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatg 320  Q
    ||||||||||||||  | ||||||| |  ||||||||||| ||||| ||| |||| |||||||||||    
T  17357701 taatttttaacttacaaagctagtacctgtataaaaatatgataaactcacaatcgagtataccatg 17357635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 165 - 374
Target Start/End: Complemental strand, 6952498 - 6952290
Alignment:
Q  165 gtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaac 264  Q
    |||||| |||||||||||||||||||||||||| ||||| || || |||| |||||||||||||||||| |||||  |||||||||||| |||||| ||     
T  6952498 gtaagtcacaaggacttagtgagagacaacaaccaccactaagtagaaggaaaacacacaagggcacgattatttccttttctcaaatcaaatttt-aat 6952400  T
Q  265 ttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatta 364  Q
    |||  | | || ||||| ||||||||| ||||||| ||| ||| |||| ||||||||||||||  ||| |||||| ||||||||||||||||||| | ||    
T  6952399 ttacaaagttactaaccgtataaaaatgtaataaactcacaataaagtgtaccatgaaaattcgaaaatctttgtgaatttatcaaaccaaataagacta 6952300  T
Q  365 tatcaaaatt 374  Q
    ||||||||||    
T  6952299 tatcaaaatt 6952290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 385 - 491
Target Start/End: Complemental strand, 33063090 - 33062984
Alignment:
Q  385 aatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatat 484  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| ||||||    
T  33063090 aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatat 33062991  T
Q  485 aaaaatc 491  Q
    |||||||    
T  33062990 aaaaatc 33062984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 16693948 - 16694165
Alignment:
Q  35 tacataagtaaaagagtcggccatcaaggaggcctaccaataaaa-tgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaa 133  Q
    |||||||| |||||||||| ||||||||| ||||||| || |||| ||| |||||||||| | | |||||||||| ||||||||||| || |||  ||      
T  16693948 tacataagcaaaagagtcgtccatcaaggtggcctacaaaaaaaaatgtgacactgctgaaccttgagtctactaccagctttctactcagctgtatgtg 16694047  T
Q  134 aatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacg 232  Q
    ||||||          |||||||| |||||||||||  || ||||||||||||| |||||||||| |||||| |||| |||| ||||||||| ||||||     
T  16694048 aatctgaaaaa-----atagaaaatgaaagagtaagccacgaggacttagtgaggagacaacaacaaccaccgactagaaggaaaacacacatgggcaca 16694142  T
Q  233 actatttatttttctcaaatcta 255  Q
    | || |||  |||||||||||||    
T  16694143 agtaattaagtttctcaaatcta 16694165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 9815140 - 9815053
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaa 251  Q
    |||||| |||| ||||||||||| |||||||||| || |||||||| |||||||||||||||| |||||| |||||  ||||||||||    
T  9815140 gtaagtcacaaagacttagtgagcagacaacaaccactaccaactagaagggaaacacacaagagcacgattattttcttttctcaaa 9815053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 488
Target Start/End: Complemental strand, 17355540 - 17355375
Alignment:
Q  315 accatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccac 414  Q
    |||||||||||||  ||||| | |||| ||||||||||||||||| | ||||| |||||| ||||| |        || | || ||||| ||| ||||||    
T  17355540 accatgaaaattcggaaaacatcgtaactttatcaaaccaaataaaagtatattaaaattccaatgtc--------gtaaggaagtgaacccaaatccac 17355449  T
Q  415 aactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaa 488  Q
    ||||||||||| ||||||| |||||  ||||||| |||||||||||| || || |||| ||||| ||||||||||    
T  17355448 aactttaaagaaaatatag-aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 17355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 13141996 - 13142075
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtga-gagacaacaactaccaccaactaaaagggaaacacacaagggcacga 233  Q
    |||||||||||||||  ||||||||||||||| ||||||||||| |||||  || | ||||| |||||||  ||||||||    
T  13141996 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccactgacaagaagggtaacacacttgggcacga 13142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 30130609 - 30130534
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaa 251  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| | |||||| || |||  |||||||||    
T  30130609 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatgagcacgagtaattaagtttctcaaa 30130534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 25477853 - 25477936
Alignment:
Q  55 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctg 139  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||    
T  25477853 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacgtagctgcttgaaaatctg 25477936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 499
Target Start/End: Complemental strand, 44324489 - 44324032
Alignment:
Q  29 aaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgc 128  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| || | | |||||||||||||||||||||||||||||| || ||||    
T  44324489 aaaatatacataaataaaagagtcggccatcaaggaggcctaccaacaaaatgtgacgccgttgagcttcgagtctactagcagctttctactcagctgc 44324390  T
Q  129 ttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaaggg 228  Q
    ||||||||||||         ||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  44324389 ttgaaaatctggaaaaaa---atagaaagagaaagagtaagtcgcaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaaggg 44324293  T
Q  229 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattca 328  Q
    ||||| |||||||| |||||||||||||||||||| |||  || ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||    
T  44324292 cacgattatttattcttctcaaatctaatttttaatttacaagactagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattca 44324193  T
Q  329 taaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataa 428  Q
    ||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || ||||||||||||||||| ||    
T  44324192 taaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaaaa 44324103  T
Q  429 tatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    ||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||| || |||||||    
T  44324102 tatagaaatcgattataatgaaaagaaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 44324032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 150 - 438
Target Start/End: Complemental strand, 45332956 - 45332676
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| |||||| ||||||||    
T  45332956 atagaaaataaaagagtaagtcacgaggacttagtgagagacaacaaccactaccaactagaagggaaacacacaagggaacgattatttacttttctca 45332857  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    ||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  45332856 aatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatca 45332757  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatc 438  Q
    |||||||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  45332756 aaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatc 45332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 155 - 488
Target Start/End: Complemental strand, 31714161 - 31713836
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatc 253  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  31714161 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagggcacgattatttatttttctcaaatc 31714062  T
Q  254 taatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacc 353  Q
    ||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||||| | |||| || ||||||||    
T  31714061 taatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaacatcgtaacttaatcaaacc 31713962  T
Q  354 aaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaa 452  Q
    |||||| | ||||| |||||| |        |||||||| | || ||||| ||| ||||||||| ||||||| ||||||| |||||  ||||||| ||||    
T  31713961 aaataaaagtatattaaaattcc--------aatgttgtaaggaagtgaacccaaatccacaac-ttaaagaaaatatag-aatcgcgtataatgaaaaa 31713872  T
Q  453 ggaatcgagatgattaaattcaaattgaatataaaa 488  Q
    |||||||| || || |||| ||||| ||||||||||    
T  31713871 ggaatcgaaataatcaaatccaaatagaatataaaa 31713836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 155 - 380
Target Start/End: Original strand, 39154633 - 39154860
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatc 253  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  39154633 aaaagaaagagtaagccacaaggacttagtgaggagacaacaaccaccaccgactagaagggaaacacacaagagcacgattatttatttttctcaaatc 39154732  T
Q  254 taatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc-ataaaactttgtaaatttatcaaac 352  Q
    ||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||   ||||| | |||| || |||||||    
T  39154733 taatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattcggaaaaacatcgtaacttaatcaaac 39154832  T
Q  353 caaataatattatatcaaaatttcaatg 380  Q
    ||||||| | ||||| |||||| |||||    
T  39154833 caaataaaagtatattaaaattccaatg 39154860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 150 - 337
Target Start/End: Original strand, 808579 - 808765
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| | ||||||| |||||| |||||| || ||| ||||||||    
T  808579 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaggggaaacccacaagagcacgattagttacttttctca 808678  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaacttt 337  Q
    ||||||| |||||| |||  |   || ||||| ||||||||||||||||| ||  || ||||| |||| |||||||||| ||| ||||    
T  808679 aatctaa-ttttaatttacaaaattattaaccgtataaaaatataataaactcccaaacaagtgtaccgtgaaaattcagaaatcttt 808765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 409 - 490
Target Start/End: Complemental strand, 2588198 - 2588117
Alignment:
Q  409 atccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaat 490  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| || |||| ||||| ||||||||||||    
T  2588198 atccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcaagataatcaaatccaaatagaatataaaaat 2588117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 4406440 - 4406347
Alignment:
Q  165 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||    
T  4406440 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctcaaatctaat 4406347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 499
Target Start/End: Original strand, 808810 - 808909
Alignment:
Q  400 tgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    |||| ||| |||||||| |||||||| |||||||||| ||  ||||||||||| |||||||||| || |||| ||||| |||||||||| || |||||||    
T  808810 tgaacccaaatccacaattttaaagaaaatatagaaaccgcgtataatgaaaaagaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 808909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 9311064 - 9311150
Alignment:
Q  165 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaa 250  Q
    |||||| | ||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||| | |||||  |||||||||    
T  9311064 gtaagtcataaggacttagtgagaagacaacaaccactaccaactagaagggaaacacacaagggcacaattattttcttttctcaa 9311150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 45332019 - 45331962
Alignment:
Q  434 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  45332019 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 45331962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 10416212 - 10416155
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 233  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| ||||||||    
T  10416212 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacatgggcacga 10416155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 4698170 - 4698095
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaa 251  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||| || ||||| || |||  |||||||||    
T  4698170 gacttagtgaggagacaacaatcaccaccaactataagggaaacacacatggacacgagtaattaagtttctcaaa 4698095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 84 - 491
Target Start/End: Complemental strand, 19435363 - 19434968
Alignment:
Q  84 acactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttag 183  Q
    |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||          ||||||||  ||||||||||||||||||||||||    
T  19435363 acacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa----atagaaaataaaagagtaagttacaaggacttag 19435268  T
Q  184 tgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccat 283  Q
    |||||||||||||| ||||||||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||   |||||||||||  |    
T  19435267 tgagagacaacaaccaccaccaactagaagggaaacgcaaaaggacacgattatttatttttctcaaatctaatttttaactttcaaggctagtaactgt 19435168  T
Q  284 ataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgaca 383  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||           
T  19435167 ataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttc------- 19435075  T
Q  384 aaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaata 483  Q
     ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||    
T  19435074 -aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaata 19434976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 165 - 499
Target Start/End: Complemental strand, 28104096 - 28103769
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |    
T  28104096 gtaagtcacaaagacttagtgaggagaaaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttatctcaaatctaatttttta 28103997  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
    |||   |||||||||||  |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |    
T  28103996 ctttcaaggctagtaactgtataaaaatataataaattcaccatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaaccaaataagact 28103897  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
    |||||||||| ||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  28103896 atatcaaaatctc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaattgattataatgaaaaggaatcgagat 28103805  T
Q  464 gattaaattcaaattgaatataaaaatcagacttaa 499  Q
     || |||| ||||| ||||||||||||||| |||||    
T  28103804 aatcaaatccaaatagaatataaaaatcaggcttaa 28103769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 165 - 499
Target Start/End: Original strand, 28068794 - 28069116
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28068794 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgaatatttatttttctcaaatctaatttttaa 28068893  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
     |||  |||||||||||| ||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||| ||||||||||||||| |      
T  28068894 tttacaaggctagtaaccgtataaaaatataataaactcacaatca---gtaccatgaaaattcataaaactttgtaaatctatcaaaccaaataaga-- 28068988  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
     ||||||||||||        ||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28068989 ctatcaaaatttc--------aatgtcgtcaagaagtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagat 28069080  T
Q  464 gattaaattcaaattgaatataaaaatcagacttaa 499  Q
     || |||| ||||| ||||||||||||| |||||||    
T  28069081 aatcaaatccaaatagaatataaaaatcggacttaa 28069116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 165 - 499
Target Start/End: Original strand, 28058369 - 28058691
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28058369 gtaagtcacaaagacttagtgaggagacaacaaccaccaccaactagaagggaaacacacaagggcacgaatatttatttttctcaaatctaatttttaa 28058468  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
     |||  |||||||||||| ||||||||||||||||| ||| |||||    |||||||||||||||||||||||||||||| ||||||||||||||| |      
T  28058469 tttacaaggctagtaaccgtataaaaatataataaactcacaatca---gtaccatgaaaattcataaaactttgtaaatctatcaaaccaaataaga-- 28058563  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
     ||||| ||||||        ||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28058564 ctatcagaatttc--------aatgtcgtcaagaagtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatgaaaaggaatcgagat 28058655  T
Q  464 gattaaattcaaattgaatataaaaatcagacttaa 499  Q
     || |||| ||||| ||||||||||||| |||||||    
T  28058656 aatcaaatccaaatagaatataaaaatcggacttaa 28058691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 166 - 491
Target Start/End: Original strand, 6911242 - 6911564
Alignment:
Q  166 taagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaac 264  Q
    ||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  6911242 taagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctcaaatctaatttttaac 6911341  T
Q  265 ttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatta 364  Q
    |||  |||||||||||  ||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||   ||    
T  6911342 ttacaaggctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatcaaaccaaataaggcta 6911441  T
Q  365 tatcaaaatttcaatgacaaaatgttgtcaagaggtg-aaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
    ||||| |||||||||| |     || ||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  6911442 tatcagaatttcaatgtc-----gtcgtcaagaggtgaaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaagaatcgagat 6911536  T
Q  464 gattaaattcaaattgaatataaaaatc 491  Q
     || || | ||||| |||||||||||||    
T  6911537 aatcaagtccaaatagaatataaaaatc 6911564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 309 - 452
Target Start/End: Complemental strand, 11200834 - 11200699
Alignment:
Q  309 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccag 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |        ||||| || ||||||||||||||     
T  11200834 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataaaactatatcaaaattcc--------aatgtcgtaaagaggtgaaaccaa 11200743  T
Q  409 atccacaactttaaagataatatagaaatcgattataatgaaaa 452  Q
    ||| | |||| |||||  |||||| ||||||| |||||||||||    
T  11200742 atcaataactataaaggaaatatataaatcgagtataatgaaaa 11200699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 17954693 - 17954784
Alignment:
Q  160 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaa 251  Q
    ||||||||||| |||||||||||||||||||||||||| || ||| |||| |||||||||||| ||| |||||| ||| ||| |||||||||    
T  17954693 aaagagtaagtcacaaggacttagtgagagacaacaaccactacccactagaagggaaacacaaaagagcacgattatgtatatttctcaaa 17954784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 23397923 - 23397984
Alignment:
Q  162 agagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacac 223  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  23397923 agagtaagtcacagggacttagtgagagacaacaaccaccaccaactagaagggaaacacac 23397984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 9436001 - 9436076
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagt-gagagacaacaactaccaccaactaaaagggaaacacaca 224  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||||||| ||||||||||| |||| |||||||||    
T  9436001 atagaaaatgaaagagtaagtcacaaggacttagtggggagacaacaaccaccaccaactataaggaaaacacaca 9436076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 5705490 - 5705547
Alignment:
Q  177 gacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacga 233  Q
    ||||||||||| |||||||||  ||||||||||| |||||||||||||||||||||||    
T  5705490 gacttagtgaggagacaacaatcaccaccaactagaagggaaacacacaagggcacga 5705547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 150 - 499
Target Start/End: Original strand, 5519373 - 5519712
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  |||||||| || ||||||||||||||||||||||| |||||||||||||||    
T  5519373 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaaatagaagggaaacacacaagggcacgattatttatttttctca 5519472  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    |||||||||||||| |||  |||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5519473 aatctaatttttaatttacaaggctagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatca 5519572  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatga 449  Q
    |||||||||| |   ||||| ||||||        |||||  ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  5519573 aaccaaataaga--ctatcagaatttc--------aatgtcttcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatga 5519662  T
Q  450 aaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    |||||||||||||| || |||| ||||| ||||||||||||| |||||||    
T  5519663 aaaggaatcgagataatcaaatccaaatagaatataaaaatcggacttaa 5519712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 150 - 489
Target Start/End: Complemental strand, 42785783 - 42785455
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| ||||||||    
T  42785783 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctca 42785684  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    |||||||||||||| |||  |||||||||||| |||||||||||||  || ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  42785683 aatctaatttttaatttacaaggctagtaaccgtataaaaatataa-caactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatca 42785585  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatga 449  Q
    ||||||| || |   ||||  ||||||        ||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  42785584 aaccaaacaaga--ctatcggaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatga 42785495  T
Q  450 aaaggaatcgagatgattaaattcaaattgaatataaaaa 489  Q
    ||| |||||||||| || |||| |||||  ||||||||||    
T  42785494 aaatgaatcgagataatcaaatccaaataaaatataaaaa 42785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 15599117 - 15599016
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| ||||||||    
T  15599117 atagaaaattaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacatgggcacgattatttacttttctca 15599018  T
Q  250 aa 251  Q
    ||    
T  15599017 aa 15599016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 491
Target Start/End: Complemental strand, 15598829 - 15598659
Alignment:
Q  312 tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatc 411  Q
    |||| |||||||||||||||||| || |||||||||||||| |||||| | ||||||||||| |||||| |        || |||||||||| ||| |||    
T  15598829 tataacatgaaaattcataaaaccttttaaatttatcaaacgaaataagactatatcaaaatctcaatgtc--------gtaaagaggtgaatccaaatc 15598738  T
Q  412 cacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||||||| || || |||| ||||| |||||||||||||    
T  15598737 cacaactttaaagaaaatatagaaatcgcgtataatg-aaaggaatcgaaataatcaaatccaaatagaatataaaaatc 15598659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 27198374 - 27198431
Alignment:
Q  317 catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 374  Q
    |||||||||||| |||||||||||||||||| ||||||||||  | ||||||||||||    
T  27198374 catgaaaattcagaaaactttgtaaatttattaaaccaaatatgactatatcaaaatt 27198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 27198198 - 27198289
Alignment:
Q  167 aagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    |||| |||| ||||||||||| |||||||||| ||||||||||| || | ||||||||||| |||| | || |||  |||||||||||||||    
T  27198198 aagtcacaaagacttagtgaggagacaacaaccaccaccaactagaacgtaaacacacaagagcacaaatagttaactttctcaaatctaat 27198289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 55 - 438
Target Start/End: Original strand, 27560947 - 27561317
Alignment:
Q  55 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntataga 154  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||          |||||    
T  27560947 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa----ataga 27561041  T
Q  155 aaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatct 254  Q
    |||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27561042 aaataaaagagtaagtcacaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctcaaatct 27561141  T
Q  255 aatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacca 354  Q
    |||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  27561142 aatttttaacttacaaggctagtaacggtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatcaaacca 27561241  T
Q  355 aataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatc 438  Q
    ||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  27561242 aataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatc 27561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 165 - 491
Target Start/End: Original strand, 4763405 - 4763727
Alignment:
Q  165 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  4763405 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaagggaaacacacaatggcacgaatagttatttttctcaaatctaatttttaa 4763504  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
    ||||  |||||||||||  ||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||   |    
T  4763505 cttacaaggctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatcaaaccaaataaggct 4763604  T
Q  364 atatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagat 463  Q
    |||||| |||||||||| |     || ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4763605 atatcagaatttcaatgtc-----gtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagat 4763699  T
Q  464 gattaaattcaaattgaatataaaaatc 491  Q
     || |||| ||||| |||||||||||||    
T  4763700 aatcaaatccaaatagaatataaaaatc 4763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 150 - 373
Target Start/End: Original strand, 11512701 - 11512925
Alignment:
Q  150 atagaaaaagaaagagtaagtt-acaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttct 247  Q
    ||||||||  ||||||||| || ||||||||||  |||| |||||||||| | || | |||||||||||||||||||||||| ||| || ||| ||||||    
T  11512701 atagaaaataaaagagtaatttcacaaggacttgatgaggagacaacaaccatcatcgactaaaagggaaacacacaagggcgcgattaattacttttct 11512800  T
Q  248 caaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttat 347  Q
    ||||||||||||| || ||| || | ||| |  | ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||| |||||    
T  11512801 caaatctaatttt-aatttacgaagatagcacgcgtataaaaatataataaactcacaatcaagtataccatgaaaattcggaaaactttgtaactttat 11512899  T
Q  348 caaaccaaataatattatatcaaaat 373  Q
    |||||||||||| | ||| |||||||    
T  11512900 caaaccaaataagactatgtcaaaat 11512925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 51533930 - 51533841
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactattta 240  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||    
T  51533930 atagacaatgaaagagtaagtcacaaggacttagtgagagacaacaaccaccacc-actagaagggaaacacacaagggcacgattattta 51533841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 18694128 - 18694217
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactattta 240  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||| ||||||    
T  18694128 atagagaatgaaagagtaagtcacaaggacttagtgagagacaacaaccaccacc-actggaagggaaacacacaagggcacgattattta 18694217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 27733593 - 27733678
Alignment:
Q  166 taagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaa 251  Q
    ||||| |||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||| ||| ||| |||||||||    
T  27733593 taagtcacaaggacttagtgagagacaacaaccactacccactagaagggaaacacacaagggcacgattatgtatatttctcaaa 27733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 5358535 - 5358635
Alignment:
Q  160 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaattt 259  Q
    ||||||||||| | ||||||||||||| |||||||||| || ||| |||| ||| ||||||||||||| ||||| |||||| |||||||||||| |||||    
T  5358535 aaagagtaagtcataaggacttagtgaaagacaacaaccactacccactagaagagaaacacacaaggacacgattatttagttttctcaaatcaaattt 5358634  T
Q  260 t 260  Q
    |    
T  5358635 t 5358635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 54351775 - 54351876
Alignment:
Q  155 aaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatct 254  Q
    |||||||||||||||  || ||||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||||  ||||||  ||||||||||||    
T  54351775 aaaagaaagagtaagccactaggacttagtgagagacaacaaccaccaccaactagaaaggaaacatacaagagcacggttattta-ctttctcaaatct 54351873  T
Q  255 aat 257  Q
    |||    
T  54351874 aat 54351876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 499
Target Start/End: Original strand, 27561332 - 27561397
Alignment:
Q  434 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||| || |||||||    
T  27561332 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 27561397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 8164473 - 8164542
Alignment:
Q  277 taaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatc 348  Q
    ||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |||  ||||||| ||||||    
T  8164473 taaccgtataaaaatataataaatttacaatcaagtgtaccatgaaaattcacaaa--tttgtaattttatc 8164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 5358666 - 5358722
Alignment:
Q  316 ccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaa 372  Q
    ||||||||| |||||||||||| ||||||||| |||||||| || | ||||||||||    
T  5358666 ccatgaaaactcataaaactttataaatttattaaaccaaacaagactatatcaaaa 5358722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 491
Target Start/End: Original strand, 11512948 - 11513039
Alignment:
Q  399 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    ||||| ||| ||||||||||||||||| |||| | |||||    |||||||||||||||||| || || |||| ||||| |||||||||||||    
T  11512948 gtgaacccaaatccacaactttaaagaaaataaa-aaatcatgcataatgaaaaggaatcgaaataatcaaatccaaatagaatataaaaatc 11513039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 489
Target Start/End: Original strand, 5358734 - 5358824
Alignment:
Q  399 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 489  Q
    ||||||||| ||| || |||||||||  ||||||||||| || |||||||| |||||||  | || || |||| ||||| |||||||||||    
T  5358734 gtgaaaccaaatctaccactttaaagcaaatatagaaatagagtataatgagaaggaatgaaaataatcaaatccaaatagaatataaaaa 5358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 590
Target Start/End: Complemental strand, 40383404 - 40383358
Alignment:
Q  544 ttgaaagccaaatttaatatctcatgttgcaaaatatctgtcatgtt 590  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||    
T  40383404 ttgaaagccaaattaaatatctcatattgaaaaatatctctcatgtt 40383358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 438
Target Start/End: Original strand, 54351969 - 54352078
Alignment:
Q  322 aaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaacttta 421  Q
    ||||||| |||||| ||||||||||| ||||||||||| |  ||||||||||| ||||  |  ||       || ||||||||||| |||||||| ||||    
T  54351969 aaattcagaaaactgtgtaaatttattaaaccaaataagaccatatcaaaattccaatatcgtaa-------aaaaggtgaaaccaaatccacaatttta 54352061  T
Q  422 aagataatatagaaatc 438  Q
    |||||| ||||||||||    
T  54352062 aagatagtatagaaatc 54352078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 150 - 491
Target Start/End: Complemental strand, 18982714 - 18982382
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  18982714 atagaaaataaaagagtaagtcacgaggacttagtgagagacaacaaccactaccaactagaagggaaacacccaagggcacgattatttatttttctca 18982615  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    |||| |||||||||||||  ||||||||||| ||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||| |||||||    
T  18982614 aatcgaatttttaacttacaaggctagtaactatataaaaatataataagttcacaatcaagtgtaccatggaaattcataaaactttgtaattttatca 18982515  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatga 449  Q
    |||||||||| | ||| ||||||||||        ||||| ||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  18982514 aaccaaataagactatgtcaaaatttc--------aatgtcgtcaagaggtgaaacccaatccacaactttaaagaaaatatataaatcgattataatga 18982423  T
Q  450 aaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    |||||||||||||| || ||| || ||| |||||||||||||    
T  18982422 aaaggaatcgagataatcaaa-tccaatagaatataaaaatc 18982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 150 - 489
Target Start/End: Original strand, 4706552 - 4706877
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    ||||||||  ||||||||||| ||| |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| ||||||||    
T  4706552 atagaaaataaaagagtaagtcacagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctca 4706651  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    |||||||||||||| |||  |||||||||||| |||||||||||||  || ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  4706652 aatctaatttttaatttacaaggctagtaaccgtataaaaatataa-caactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatca 4706750  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatga 449  Q
    ||||||| || | |||     ||||||        |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  4706751 aaccaaacaagactat-----aatttc--------aatgttgtcaagaggtgaaatcaaatccacaactttaaagaaaatatagaaatcgattataatga 4706837  T
Q  450 aaaggaatcgagatgattaaattcaaattgaatataaaaa 489  Q
    |||||||||||||| || |||| |||||  ||||||||||    
T  4706838 aaaggaatcgagataatcaaatccaaataaaatataaaaa 4706877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 160 - 373
Target Start/End: Original strand, 28603022 - 28603234
Alignment:
Q  160 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaattt 259  Q
    ||||||||||| | | |||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||| || ||| ||||||||||||||| ||    
T  28603022 aaagagtaagtcagagggacttagtgagagacaacaatcaccaccaactagaagggaaacacacaagagcacgattagttacttttctcaaatctaa-tt 28603120  T
Q  260 ttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataa 359  Q
    |||| |||  | |||| || || ||||||||||| ||||| |||  ||||| | ||||||||||||||| |||||||||||| |||||||||||||||||    
T  28603121 ttaatttacaaagctaatacccgtataaaaatatgataaactcacgatcaaatgtaccatgaaaattcagaaaactttgtaactttatcaaaccaaataa 28603220  T
Q  360 tattatatcaaaat 373  Q
     | |||||||||||    
T  28603221 aagtatatcaaaat 28603234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 150 - 487
Target Start/End: Original strand, 26917241 - 26917567
Alignment:
Q  150 atagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctca 249  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | |||| ||||||||    
T  26917241 atagaaaatgaaggagtaagttacaaggacttagtgagagacaacaaccaccacc-actagaagggaaacacacaagggcacgattctttacttttctca 26917339  T
Q  250 aatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatca 349  Q
    |||| || |||| | |||  | | || ||||| | ||||||||||||||| ||| || ||||| |||| |||||||||| ||| | || ||| |||  ||    
T  26917340 aatc-aaattttgatttacaaagttactaaccgtgtaaaaatataataaactcacaaacaagtgtaccgtgaaaattcagaaatc-ttataagtttcaca 26917437  T
Q  350 aaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg- 448  Q
    || ||||||| | |||| ||||||| |        ||||| || |||| ||||| ||| ||||||||||||||||| |||||||||||||  |||||||     
T  26917438 aa-caaataagactataccaaaattcc--------aatgtcgtaaagaagtgaacccaaatccacaactttaaagaaaatatagaaatcgcgtataatga 26917528  T
Q  449 aaaaggaatcgagatgattaaattcaaattgaatataaa 487  Q
    |||||||||||| || || |||| ||||| |||||||||    
T  26917529 aaaaggaatcgaaataatcaaatccaaatagaatataaa 26917567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 26340387 - 26340602
Alignment:
Q  161 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttt 260  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| | | || |||||  || |||||||| | |||||    
T  26340387 aagagtaagtcacaaggacatagtgagagacaacaaccaccaccaactagaagggaaacacacaagtgtatgattattttcttctctcaaatatgatttt 26340486  T
Q  261 taacttatgaggctagtaaccatataaaaa-tataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaat 357  Q
     || |||  | | ||||||| || |||||| ||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| |||||    
T  26340487 -aatttacaaagttagtaacaatttaaaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaat 26340585  T
Q  358 aatattatatcaaaatt 374  Q
    || | ||||||||||||    
T  26340586 aagaatatatcaaaatt 26340602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 15925219 - 15925033
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||  ||||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||| |||||| ||    
T  15925219 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaagcacacaacggcacgattatttacttttctcaaatcaaatttt-aa 15925121  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaa 351  Q
     |||  | | || ||||| ||||||||||||||||| ||  || ||||| |||  |||||||||| ||| |||| |||||||||||||    
T  15925120 tttacaaagttattaaccgtataaaaatataataaactctcaaacaagtgtactgtgaaaattcagaaatctttataaatttatcaaa 15925033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 409 - 499
Target Start/End: Complemental strand, 15924982 - 15924891
Alignment:
Q  409 atccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 499  Q
    |||||||| |||||||| |||||||||||||  |||| || |||||||||||| || || |||| ||||| |||| |||||||| |||||||    
T  15924982 atccacaattttaaagaaaatatagaaatcgcatatagtgaaaaaggaatcgaaataatcaaatccaaatagaatgtaaaaatcggacttaa 15924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 55 - 491
Target Start/End: Complemental strand, 4035 - 3615
Alignment:
Q  55 ccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgcttgaaaatctggnnnnnnnntataga 154  Q
    ||||||| || ||||||||| || | || |||| ||||| ||| ||||||||||||||||| ||||  | |||||||||||||||          |||||    
T  4035 ccatcaaagaagcctaccaaaaaga-gtgacacggctgaactttgagtctactagcagcttcctacttagctgcttgaaaatctgaaaaaa----ataga 3941  T
Q  155 aaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatct 254  Q
    |||  ||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| | |||| ||||||||||| |    
T  3940 aaataaaagagtaagtcacaaggacttagtgagagacaacaaccactaccaactagaagggaaacacacaagggcacgattttttacttttctcaaatat 3841  T
Q  255 aatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaacca 354  Q
    ||||||||| |||  |||||||||||  ||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||| ||||||||||||    
T  3840 aatttttaatttacaaggctagtaactgtataaaaatataataaattcacaatcaaatgtaccatgaaaattcataaaacttcgtaattttatcaaacca 3741  T
Q  355 aataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaagg 454  Q
    ||||| | |||    |||||||        ||||| ||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  3740 aataagactat---caaatttc--------aatgtcgtcaagaggtgaaactaaatccacaactttaaagaaaatatataaatcgattataatgaaaagg 3652  T
Q  455 aatcgagatgattaaattcaaattgaatataaaaatc 491  Q
    ||||||||| || ||||||| || |||||||||||||    
T  3651 aatcgagataatcaaattcacatagaatataaaaatc 3615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 145; Significance: 6e-76; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 29 - 491
Target Start/End: Complemental strand, 60956 - 60505
Alignment:
Q  29 aaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgc 128  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||| || | |||||||||||||||| ||||| ||||||||| || ||||    
T  60956 aaaatatacataaataaaagagtcggccatcaaggaagcctaccaacaaaatgtgacgccgctgagcttcgagtctgctagccgctttctactcagctgc 60857  T
Q  129 ttgaaaatctggnnnnnnnntatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaaggg 228  Q
    |||||||||||          ||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  60856 ttgaaaatctgaaaaa-----atagaaagagaaagagtaagtcgcaaggacttagtgagagacaacaaccaccaccaactagaagggaaacacacaaggg 60762  T
Q  229 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc- 327  Q
    ||||| || ||| ||||||||||||||| | |||| |||  | ||||||| || ||||||||||| ||||| |||  ||||||| |  |||||||||||     
T  60761 cacgattaattacttttctcaaatctaa-tattaatttacaaagctagtacccgtataaaaatattataaactcacgatcaagtgtctcatgaaaattcg 60663  T
Q  328 -ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgt-caagaggtgaaaccagatccacaactttaaaga 425  Q
     | ||||||| |||  ||||||||||||||||| | |||||||||||       || |||||| ||  || ||||||| ||| |||| ||||||||||||    
T  60662 taaaaaacttggtagttttatcaaaccaaataagactatatcaaaat-------ac-aaatgtcgtaaaaaaggtgaatccaaatccgcaactttaaaga 60571  T
Q  426 taatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 491  Q
     ||||| |||||| |  |||||||||||||||||| || || |||| ||||| |||||||| ||||    
T  60570 aaatatcgaaatcaagcataatgaaaaggaatcgaaataatcaaatccaaatagaatataacaatc 60505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 161 - 489
Target Start/End: Original strand, 7563 - 7884
Alignment:
Q  161 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttt 260  Q
    |||||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||  ||||||||||| | |||||    
T  7563 aagagtaagtcacaaggacatagggagagacaacaaccaccaccaactagaagggaaacacacaagggtacgattattttcttttctcaaatatgatttt 7662  T
Q  261 taacttatgaggctagtaaccatat-aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaat 357  Q
     || |||  | | ||||||| || | |||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| |||||    
T  7663 -aatttacaaagttagtaacaattttaaaaatataataaactcacaatcaagaatataccatgaaaattcagaaaactttgtaaatttatcaaatcaaat 7761  T
Q  358 aatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaat 457  Q
    || | |||||||||||| |||||         ||  |||||||||| ||| ||| ||||||||||||| ||||||||||  |  ||| ||||||| ||||    
T  7762 aagaatatatcaaaattccaatg---------tggtaagaggtgaatccaaatcaacaactttaaagaaaatatagaaactgggtatgatgaaaatgaat 7852  T
Q  458 cgagatgattaaattcaaattgaatataaaaa 489  Q
    ||| || || |||| ||||| |||||| ||||    
T  7853 cgaaataatcaaatccaaatagaatatgaaaa 7884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 10548 - 10763
Alignment:
Q  161 aagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttt 260  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| | | || |||||  || |||||||| | |||||    
T  10548 aagagtaagtcacaaggacatagtgagagacaacaaccaccaccaactagaagggaaacacacaagtgtatgattattttcttctctcaaatatgatttt 10647  T
Q  261 taacttatgaggctagtaaccatataaaaa-tataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaat 357  Q
     || |||  | | ||||||| || |||||| ||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| |||||    
T  10648 -aatttacaaagttagtaacaatttaaaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaat 10746  T
Q  358 aatattatatcaaaatt 374  Q
    || | ||||||||||||    
T  10747 aagaatatatcaaaatt 10763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 165 - 380
Target Start/End: Complemental strand, 995 - 780
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  995 gtaagtcacaaagacttagtgaggagacatcaaccaccaccaactagaagggaaacacacaagggcacgattatttatttttctcaaatctaatttttaa 896  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatatt 363  Q
    ||||  | ||||||| || ||||||||||| || || ||| |||| ||| | |||||||||||   ||||| | |||| ||||||||||||||||| | |    
T  895 cttacaaagctagtacccgtataaaaatatgat-aactcacaatcgagtgtgccatgaaaattaggaaaacatcgtaactttatcaaaccaaataaaagt 797  T
Q  364 atatcaaaatttcaatg 380  Q
    |||| |||||| |||||    
T  796 atattaaaattccaatg 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 233369 - 233479
Alignment:
Q  29 aaaatgtacataagtaaaagagtcggccatcaaggaggcctaccaataaaatgtcacactgctgagcttcgagtctactagcagctttctacccaactgc 128  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | || |    
T  233369 aaaatgtacataagtaaaggagtcggccatcaaggaggcctaccaataaaatgtgacactgctgagcttcgagtctactagcaactttctacctagcttc 233468  T
Q  129 ttgaaaatctg 139  Q
    |||||||||||    
T  233469 ttgaaaatctg 233479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 182811 - 182889
Alignment:
Q  154 aaaaagaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcac 231  Q
    |||| |||||| ||||| ||||| |||||| ||| |||||||||  ||||||||||| |||| ||||||||||| ||||    
T  182811 aaaatgaaagactaagtcacaagtacttagggaggagacaacaatcaccaccaactagaaggaaaacacacaagtgcac 182889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 412872 - 412980
Alignment:
Q  149 tatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctc 248  Q
    |||||||||  ||||| ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||  || ||| |||||||    
T  412872 tatagaaaataaaagattaagtcacaaggtcttaatgagagacaacaactaccactaactaaaagggaaacacacaagggcacggataattacttttctc 412971  T
Q  249 aaatctaat 257  Q
    |||||||||    
T  412972 aaatctaat 412980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 406869 - 406944
Alignment:
Q  149 tatagaaaaagaaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacaca 224  Q
    |||||||||  ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  406869 tatagaaaataaaagattaagtcacaaggacttagtgagagacaacaaccaccaccaactaaaagggaaacacaca 406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 424255 - 424352
Alignment:
Q  160 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    ||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||||||   || ||| ||||||||||||||||    
T  424255 aaagattaagtcacaaggacatagtgagagacaacaaccaccatcaactaaaagggaaacgcacaagggcaccgataattacttttctcaaatctaat 424352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 36264128 - 36264224
Alignment:
Q  160 aaagagtaagttacaaggacttagtgagagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  36264128 aaagagtaagtcacagggacttagtgagagacaacaaccaccaccaacaagaagggaaacacacaagagcacgattattta-ttttctcaaatctaat 36264224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 28803838 - 28803653
Alignment:
Q  165 gtaagttacaaggacttagtgag-agacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaatttttaa 263  Q
    |||||| |||| ||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||| |||||| |||||||||||| ||||||  |    
T  28803838 gtaagtcacaaagacttagtgaggagacaacaatcaccaccaactagaagggaaatacacaagggcacgattatttacttttctcaaatcaaatttt--a 28803741  T
Q  264 cttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaa 351  Q
     |||  | | || ||| | ||||||||||||||||| ||  || |||||  ||| |||||||||| ||| |||| |||||||||||||    
T  28803740 attacaaagttattaaacgtataaaaatataataaactcccaaacaagtgcaccgtgaaaattcagaaatctttataaatttatcaaa 28803653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 36264288 - 36264365
Alignment:
Q  297 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 373  Q
    ||||||| |||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||    
T  36264288 aaattcacaatcaagtgtatacatgaaaattcagaaaactttataaatttatcaaaccaaataagattatatcgaaat 36264365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 44060056 - 44060131
Alignment:
Q  165 gtaagttacaaggacttagtgaga-gacaacaactaccaccaactaaaagggaaacacacaagggcacgactattt 239  Q
    |||||| |||| |||||||||||| ||||||||| || |||||||| || |||||||||||||||||||| |||||    
T  44060056 gtaagtcacaaagacttagtgagaagacaacaaccactaccaactagaaaggaaacacacaagggcacgattattt 44060131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 28803613 - 28803513
Alignment:
Q  400 tgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagactta 498  Q
    |||| ||| |||||||| |||||||| |||||||||||||  ||||||| |||||||||||| || || |||| ||||| || |||||||||  ||||||    
T  28803613 tgaacccaaatccacaattttaaagagaatatagaaatcgcatataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaattggactta 28803514  T
Q  499 a 499  Q
    |    
T  28803513 a 28803513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 29466909 - 29466983
Alignment:
Q  159 gaaagagtaagttacaaggacttagtgag-agacaacaactaccaccaactaa-aagggaaacacacaagggcac 231  Q
    ||||| |||||| |||| || |||| ||| |||||||||| |||||||||| | |||||||||||||||||||||    
T  29466909 gaaagggtaagtcacaatgatttagcgaggagacaacaaccaccaccaacttagaagggaaacacacaagggcac 29466983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 29467028 - 29467106
Alignment:
Q  279 accatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataa 359  Q
    ||||| ||||||| ||||||||  | |||||||| ||||||| |||||||||||  ||| |||||||||| || |||||||    
T  29467028 accatgtaaaaatttaataaatcaacaatcaagtgtaccatggaaattcataaa--tttataaatttatccaatcaaataa 29467106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 31705 - 31792
Alignment:
Q  168 agttacaaggacttagtg-agagacaacaactaccaccaactaaaagggaaacacacaagggcacgactatttatttttctcaaatctaat 257  Q
    ||||||||||||||||||  |||||||||   |||||||| || |||||||||| |||||||||| | || |||| |||||||||| ||||    
T  31705 agttacaaggacttagtgcggagacaaca---accaccaaatagaagggaaacatacaagggcacaaatagttatctttctcaaatataat 31792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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