View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0690_low_25 (Length: 220)

Name: NF0690_low_25
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0690_low_25
NF0690_low_25
[»] chr2 (5 HSPs)
chr2 (2-41)||(12001098-12001137)
chr2 (2-41)||(42651292-42651331)
chr2 (6-41)||(3666877-3666912)
chr2 (2-41)||(38248927-38248966)
chr2 (2-40)||(41564825-41564863)
[»] chr7 (5 HSPs)
chr7 (2-41)||(38099232-38099271)
chr7 (6-41)||(47171405-47171440)
chr7 (3-41)||(9269934-9269972)
chr7 (12-41)||(40496407-40496436)
chr7 (13-41)||(10234010-10234038)
[»] chr1 (6 HSPs)
chr1 (6-41)||(1159091-1159126)
chr1 (6-41)||(1478554-1478589)
chr1 (6-38)||(35596958-35596990)
chr1 (6-41)||(1477973-1478008)
chr1 (3-39)||(23733421-23733457)
chr1 (5-41)||(34082899-34082935)
[»] chr3 (3 HSPs)
chr3 (4-41)||(33291840-33291877)
chr3 (1-38)||(46889498-46889535)
chr3 (2-41)||(52696072-52696112)
[»] scaffold0434 (1 HSPs)
scaffold0434 (3-39)||(12892-12928)
[»] chr8 (2 HSPs)
chr8 (6-38)||(3029260-3029292)
chr8 (6-38)||(13950178-13950210)
[»] scaffold1862 (1 HSPs)
scaffold1862 (6-41)||(39-74)
[»] chr6 (2 HSPs)
chr6 (6-41)||(13252833-13252868)
chr6 (2-38)||(10092441-10092477)
[»] chr5 (1 HSPs)
chr5 (2-41)||(16133582-16133621)
[»] chr4 (4 HSPs)
chr4 (6-41)||(52408294-52408329)
chr4 (6-41)||(52413629-52413664)
chr4 (5-38)||(49442895-49442928)
chr4 (3-39)||(51708189-51708225)


Alignment Details
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 12001137 - 12001098
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12001137 taatggttgagatttggtgtaagtcttttgacttacacct 12001098  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 42651292 - 42651331
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42651292 taatggttgagatttggtgtaagtcttttgacttacacct 42651331  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 3666912 - 3666877
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  3666912 ggttaagatttggtgtaagtcttttgacttacacct 3666877  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38248927 - 38248966
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  38248927 taatggttgagatttggtgtaagtcattagacttacacct 38248966  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 41564863 - 41564825
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacc 40  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  41564863 taatggttaagatttggtgtaagtcttttaacttacacc 41564825  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38099232 - 38099271
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  38099232 taatggttgagatttggtgcaagtcttttgacttacacct 38099271  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 47171405 - 47171440
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  47171405 ggttaagatttggtgtaagtcttttgacttacacct 47171440  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 9269934 - 9269972
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  9269934 aatggttgatatttgttgtaagtcttttgacttacacct 9269972  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 40496407 - 40496436
Alignment:
Q  12 gatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||    
T  40496407 gatttggtgtaagtcttttgacttacacct 40496436  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 10234010 - 10234038
Alignment:
Q  13 atttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||||||||    
T  10234010 atttggtgtaagtcttttgacttacacct 10234038  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 1159126 - 1159091
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  1159126 ggttgagatttggtgtaagtcttttgacttacacct 1159091  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 1478554 - 1478589
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  1478554 ggttgagatttggtgtaagtcttttgacttacacct 1478589  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 35596990 - 35596958
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||||||||||||||    
T  35596990 ggttgagatttggtgtaagtcttttgacttaca 35596958  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 1478008 - 1477973
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  1478008 ggttaagatttggtgtaagtcttttgacttacacct 1477973  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23733457 - 23733421
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  23733457 aatggatgagatttggtgtaaatcttttgacttacac 23733421  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 34082899 - 34082935
Alignment:
Q  5 tggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34082899 tggttgagatttggtgtaagtctaatgacttacacct 34082935  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 33291877 - 33291840
Alignment:
Q  4 atggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33291877 atggttgagatttggtgtaagttttttgacttacacct 33291840  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46889535 - 46889498
Alignment:
Q  1 ctaatggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  46889535 ctaatggttgagattttgtgtaagtctttcgacttaca 46889498  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 52696072 - 52696112
Alignment:
Q  2 taatggttgagatttggtgtaag-tcttttgacttacacct 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  52696072 taatggttgagatttggtgtaagtttttttgacttacacct 52696112  T

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Target: scaffold0434 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12928 - 12892
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12928 aatggttgagatttggtgtaagtcttttaacttacac 12892  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 3029260 - 3029292
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||||||||||||||    
T  3029260 ggttgagatttggtgtaagtcttttgacttaca 3029292  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 13950178 - 13950210
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||| ||||||||||||||||||    
T  13950178 ggttgagatttggtataagtcttttgacttaca 13950210  T

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Target: scaffold1862 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 39 - 74
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  39 ggttgagatttggtgtaagtctttggacttacacct 74  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 13252833 - 13252868
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  13252833 ggttgagatttggtgtaagtctttggacttacacct 13252868  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 10092441 - 10092477
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttaca 38  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  10092441 taatggttgagatttagtgtaagtcttatgacttaca 10092477  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 16133621 - 16133582
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  16133621 taatggttgagatttggtgtaagtctttacacttacacct 16133582  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 52408329 - 52408294
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  52408329 ggttgagatttggtgtaagtctttggacttacacct 52408294  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 52413629 - 52413664
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  52413629 ggttgagatttggtgtaagtctttggacttacacct 52413664  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 49442895 - 49442928
Alignment:
Q  5 tggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||| |||||||||||    
T  49442895 tggttgagatttggtgtaagtcatttgacttaca 49442928  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 51708189 - 51708225
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  51708189 aatggatgagatttgatgtaagtcttttgacttacac 51708225  T

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