View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0690_low_29 (Length: 212)
Name: NF0690_low_29
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6191358 - 6191311
Alignment:
| Q |
1 |
aattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga |
48 |
Q |
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| T |
6191358 |
aattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga |
6191311 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 37454249 - 37454303
Alignment:
| Q |
6 |
tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttatt |
60 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
37454249 |
tgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttatt |
37454303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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