View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_low_32 (Length: 203)
Name: NF0690_low_32
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29865596 - 29865469
Alignment:
| Q |
1 |
tgcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29865596 |
tgcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac |
29865497 |
T |
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| Q |
101 |
ccggcactcctgctggttgagcctgatt |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29865496 |
ccggcactcctgctggttgagcctgatt |
29865469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 29871146 - 29871017
Alignment:
| Q |
2 |
gcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac- |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||| || |||||||||| |||| |
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| T |
29871146 |
gcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgtcccaatcgtctgctcgcttcggctagacgctaacc |
29871047 |
T |
|
| Q |
101 |
--ccggcactcctgctggttgagcctgatt |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29871046 |
cgccggcactcctgctggttgagcctgatt |
29871017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44574094 - 44574046
Alignment:
| Q |
1 |
tgcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcg |
49 |
Q |
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|||| |||||||||| ||||| |||||||| || ||||||||||||||| |
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| T |
44574094 |
tgcatcatcatcatcatgtatgtcaagatggtttaatttgagagcagcg |
44574046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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