View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_low_5 (Length: 552)
Name: NF0690_low_5
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 30 - 543
Target Start/End: Original strand, 19597847 - 19598360
Alignment:
| Q |
30 |
aaatcaagcaagatgatcacaaattggtcaatagtcataaatggccattcagatccataatcacaatcaaatgggaactcatatcgaatggccaaccaat |
129 |
Q |
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| T |
19597847 |
aaatcaagcaagatgatcacaaattggtcaatagtcataaatggccattcagatccataatcacaatcaagtgggaactcatatcgaatggccaaacaat |
19597946 |
T |
|
| Q |
130 |
taattgtgccactcacacacactccacagttcatgaacaaatgatgatagaatgtacgaccatggtcaagaggaaccacggtggcagggaaacattgaat |
229 |
Q |
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| T |
19597947 |
taattgtgccactcacacacactccacagttcatgaacaaatgatgatagaatgtacgaccatggtcaagaggaaccacggtggcagggaaacattgaat |
19598046 |
T |
|
| Q |
230 |
atctcttcagctattttcacgcaaataaaaaactctcacttcgttattctttagatggaatgccacaatcttgtaagtgtcaattgaattacaataacca |
329 |
Q |
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| T |
19598047 |
atctctccagctattttcacgcaaatcaaaaactctcacttcgttattctttagatggaatgccacaatcttgtaagtgtcaattgaattacaataacca |
19598146 |
T |
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| Q |
330 |
aatgcgaacttccaagatcttaaaatacactcgcttgattgtggcgtacttaattgtgggatacggaaacaaaaccttcgatgagtaggataatgacgat |
429 |
Q |
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| T |
19598147 |
aatgcgaacttccaagatcttaaaatacactcgcttgattgtggcgtacttaattgtgggatacggaaacaaaaccttcgatgagtaggataatgacgat |
19598246 |
T |
|
| Q |
430 |
tacaaaatttaatggccctgtcgtgaaaaaacactattgtgttagataatgtcctggttgctgggttccatacataaagcaagacctctccaaatttatt |
529 |
Q |
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| T |
19598247 |
tacgaaatttaatggccctgtcgtgaaaaaacactattgtgttagataatgacctggttgctgggttccatacataaagcaagacctctccaaatttatt |
19598346 |
T |
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| Q |
530 |
gttctgagaataat |
543 |
Q |
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|||||||||||||| |
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| T |
19598347 |
gttctgagaataat |
19598360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 18983507 - 18983559
Alignment:
| Q |
449 |
gtcgtgaaaaaacactattgtgttagataatgtcctggttgctgggttccata |
501 |
Q |
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|||||||| |||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
18983507 |
gtcgtgaagaaacactattttgttagataatgtcttggttgctgggttccata |
18983559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 18988309 - 18988361
Alignment:
| Q |
449 |
gtcgtgaaaaaacactattgtgttagataatgtcctggttgctgggttccata |
501 |
Q |
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| T |
18988309 |
gtcgtgaagaaacactattttgttagataatgtcttggttgctgggttccata |
18988361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 18953460 - 18953512
Alignment:
| Q |
449 |
gtcgtgaaaaaacactattgtgttagataatgtcctggttgctgggttccata |
501 |
Q |
| |
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|||||||| ||||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
18953460 |
gtcgtgaagaaacaatattttgttagataatgtcttggttgctgggttccata |
18953512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 18998153 - 18998205
Alignment:
| Q |
449 |
gtcgtgaaaaaacactattgtgttagataatgtcctggttgctgggttccata |
501 |
Q |
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|||||||| |||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
18998153 |
gtcgtgaagaaacactattttgttagatagtgtcttggttgctgggttccata |
18998205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 19637710 - 19637764
Alignment:
| Q |
458 |
aaacactattgtgttagataatgtcctggttgctgggttccatacataaagcaag |
512 |
Q |
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||||| |||| ||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
19637710 |
aaacaatattttgtcagacaatgtcctggttgctgggttccataagtaaagcaag |
19637764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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