View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_low_6 (Length: 452)
Name: NF0690_low_6
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 41 - 421
Target Start/End: Complemental strand, 55329300 - 55328912
Alignment:
| Q |
41 |
ttttggacataagttcgaagatttcatcgaagagaggattggtgttgatgaacatgaatcgaccattatggcgagcaagggaagagatgaaatttatagc |
140 |
Q |
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| T |
55329300 |
ttttggacataagttcgaagatttcatcgaagagaggattggtgttgatgaacatgaatcgaccattatggcgagcaagggaagagatgaaattgatagc |
55329201 |
T |
|
| Q |
141 |
acttcgcatacaaatcaaggtcttatcggaatcgatgattgccattctgttgcgaaggccgtaagtgtaatctttgaaatgatgagtggcgacttgacga |
240 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329200 |
acttcgcatacaaatcaaagtcttatcggaatcgatgattgccattctgttgcgaaggccgtaagtgtaatctttgaaatgatgagtggcgacttgacga |
55329101 |
T |
|
| Q |
241 |
ccaatgtgtgcatttgtgctaagaagcttctgtatcactacagaatgaatcgtcatgcttcttctcgattgattccaattccaattcaaaaccttcaatg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329100 |
ccaatgtgtgcatttgtgctaagaagcttctgtatcactacagaatgaatcgtcatgcttcttctcgattgattccaattccaattcaaaaccttcaatg |
55329001 |
T |
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| Q |
341 |
cttttagggtt--------nnnnnnnnnnnncctcccttctcaatcaactgtaaaacaaaatttattatacaagaacataagacttgtt |
421 |
Q |
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| T |
55329000 |
cttttagggtttctctctctctctctctctccctcccttctcaatcaactgtaaaacaaaatttattatacaggaacataaaacttgtt |
55328912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 10663782 - 10663750
Alignment:
| Q |
14 |
acatcatctcaaaatcaatcaatcaccttttgg |
46 |
Q |
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| T |
10663782 |
acatcatctcaaactcaatcaatcaccttttgg |
10663750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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