View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0690_low_7 (Length: 442)
Name: NF0690_low_7
Description: NF0690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0690_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 71 - 366
Target Start/End: Original strand, 39919385 - 39919681
Alignment:
| Q |
71 |
tcatgttttaaaatctacacaaatatattaagaaaaagataaataacaaaattgttatttttaatgtaaaagaagatgtgagttatctatctatcttccc |
170 |
Q |
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| T |
39919385 |
tcatgttttaaaatctacacaaatatattaagaaaaagataaataacaaaattgttatttttaatgtaaaagaagatgtgagttatctatctatcttccc |
39919484 |
T |
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| Q |
171 |
aaggaagagaagttgtgaagtgaggg-atgataccgaactgtgttagagtaacaacagccacaaccatggctgttccttcattcatggcaatacgaagaa |
269 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39919485 |
aaggaagagaagttgtgaagtgaggggatgataccgaactgtgttagagtaacaacagccacaaccatggctgttccttcattcatggcaatacgaagaa |
39919584 |
T |
|
| Q |
270 |
gacccatatgcttcttatgttgcgcttcttcttcaaccatcatcaatacagagcaattacgctctcaacttgatcatcttcatgctgaagcagatac |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39919585 |
gacccatatgcttcttatgttgcgcttcttcttcaaccatcatcaatacagagcaattacgttctcaacttgatcatcttcatgctgaagcagatac |
39919681 |
T |
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