View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0692-Insertion-3 (Length: 443)

Name: NF0692-Insertion-3
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0692-Insertion-3
NF0692-Insertion-3
[»] chr7 (3 HSPs)
chr7 (8-428)||(39840973-39841402)
chr7 (124-428)||(39730616-39730927)
chr7 (102-213)||(39729332-39729441)
[»] chr1 (1 HSPs)
chr1 (343-386)||(29855522-29855565)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Original strand, 39840973 - 39841402
Alignment:
Q  8 tttggtttcaccctaaaattgattttgatttggtcagttttgatccgattataagtggacgtattcaaacaaaaatcatttcaattttaactcaatttca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39840973 tttggtttcaccctaaaattgattttgatttggtcagttttgatccgattttaagtggacgtattcaaacaaaaatcatttcaattttaactcaatttca 39841072  T
Q  108 acg--aatcaacattgacaaaatcaatttttatcattgcagaatcaaacttgtcaagactatcgattctttcactcttaattgtgttaagtaccttttcc 205  Q
    |||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39841073 acgaaaatcaacatttacaaaatcaatttttatcatcgcagaatcaaacttgtcaagactatcgattctttcactcttaattgtgttaagtaccttttcc 39841172  T
Q  206 attgttggcnnnnnnnccttgtgttcttgattggtaacaaaagtttttcatttgattcacatatatagtgagcatgcaagg--------acgaatatacg 297  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  39841173 attgttggc-aaaaaaccttgtgttcttgattggtaacaaaagtttttcatttgattcacatatatagtgagcatgcaaggacgaataaacgaatatacg 39841271  T
Q  298 gtagctacatgtgacgatcgcaacacttgatgaagagaaaggtaaaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtcttt 397  Q
    |||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39841272 gtagctacatgtggtaatcacaacacttgatgaagagaaaggtaaaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtcttt 39841371  T
Q  398 ttccttctttccaattgctttcctgaaacac 428  Q
    |||||| ||||||||||||||||||||||||    
T  39841372 ttccttatttccaattgctttcctgaaacac 39841402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 124 - 428
Target Start/End: Complemental strand, 39730927 - 39730616
Alignment:
Q  124 aaaatcaatttttatcattgcagaatcaaacttgtcaagactatcgattctttcactcttaattgtgttaagtaccttttccattgttggcnnnnnnncc 223  Q
    ||||||||| ||| |||| ||||||||||||| ||||| |||||| ||| |||  | ||||||||||||| |||| |||||| ||||| ||       |     
T  39730927 aaaatcaatatttgtcatcgcagaatcaaactcgtcaacactatcaatttttttccccttaattgtgttatgtacattttcccttgtttgcaaaaaatc- 39730829  T
Q  224 ttgtgttcttgattggtaacaaaagtttttcat-ttgattcacatatatagtgagcatgcaaggacgaata--------tacggtagctacatgtgacga 314  Q
    ||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||        |||||||||||||||||   |    
T  39730828 ttgcgttcttgattagtaacaaaagtttttcacgttgattcacatatatagtgagcatgcaaggacgaataaacgaatatacggtagctacatgtggtaa 39730729  T
Q  315 tcgcaacacttgatgaagagaaaggtaaaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtctttttccttctttccaattg 414  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39730728 tcacaacacttgatgaagagaaaggtaaaaaggtcaataactgcattcta-tttgaggcttcatattagattatcaagtctttttccttctttccaattg 39730630  T
Q  415 ctttcctgaaacac 428  Q
    ||||| || |||||    
T  39730629 ctttcatgtaacac 39730616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 39729441 - 39729332
Alignment:
Q  102 atttcaacgaa--tcaacattgacaaaatcaatttttatcattgcagaatcaaacttgtcaagactatcgattctttcactcttaattgtgttaagtacc 199  Q
    |||||||||||  |||||||| |||||||||||||||||||     ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  39729441 atttcaacgaaattcaacatttacaaaatcaatttttatca-----gaatcaaacttgtcaagactatcaattctttcactattaattgtgttatgtacc 39729347  T
Q  200 -ttttccattgttgg 213  Q
     ||||||||||||||    
T  39729346 tttttccattgttgg 39729332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 29855565 - 29855522
Alignment:
Q  343 aaaggtcaataactgctttctattttgaggcttcatcttagatt 386  Q
    ||||||||||||||| ||||||| || |||||||||||||||||    
T  29855565 aaaggtcaataactgttttctatatttaggcttcatcttagatt 29855522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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