View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0692-Insertion-6 (Length: 271)

Name: NF0692-Insertion-6
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0692-Insertion-6
NF0692-Insertion-6
[»] chr5 (1 HSPs)
chr5 (13-216)||(13134266-13134469)
[»] chr7 (2 HSPs)
chr7 (96-216)||(30237180-30237300)
chr7 (26-61)||(30237302-30237337)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 13134266 - 13134469
Alignment:
Q  13 aaaggtatatatgatgatgatggagagcccagatctttccccacctcaaatagacacatctcgaccgtccctcggtttcccactaggtactggtctcctc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13134266 aaaggtatatatgatgatgatggagagcccagatctttccccacctcaaatagacacatctcgaccgtccctcggtttcccactaggtactgctctcctc 13134365  T
Q  113 ttggtcatcatcttcagcttaagtggtatcttctcatgttggtaccactgggaaaagtttcgttcacttcatcaatctctctctcatcttgaggctgcac 212  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13134366 ttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttcgttcacttcatcaatctctctctcatcttgaggctgcac 13134465  T
Q  213 aagc 216  Q
    ||||    
T  13134466 aagc 13134469  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 30237300 - 30237180
Alignment:
Q  96 taggtactggtctcctcttggtcatcatcttcagcttaagtggtatcttctcatgttggtaccactgggaaaagtttcgttcacttcatcaatctctctc 195  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  30237300 taggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttctttcacttcatcaatctctctc 30237201  T
Q  196 tcatcttgaggctgcacaagc 216  Q
    |||||||||| || |||||||    
T  30237200 tcatcttgagtctccacaagc 30237180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 30237337 - 30237302
Alignment:
Q  26 atgatgatggagagcccagatctttccccacctcaa 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  30237337 atgatgatggagagcccagatctttccccacctcaa 30237302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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