View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0692-Insertion-8 (Length: 192)
Name: NF0692-Insertion-8
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 8e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 33142952 - 33143130
Alignment:
| Q |
8 |
caaatatgattgaaacaactagtctaatttcaaaacctaaaagttcatctgcaatttcagctttatcttctgcatgtgcatcttcttctaccaatgcaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33142952 |
caaatatgattgaaacaactagtctaatttcaaaacctaaaagttcatctgcaatttcagctttatcttctgcatgtgcatcttcttctaccaatgcaac |
33143051 |
T |
|
| Q |
108 |
aattaacactaggtactttctgaatgaagttcatagaacactctcaagtttgaggcatgtaaagctgctatatttcttt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33143052 |
aattaacactaggtactttctgaatgaagttcatagaacactctcaagtttgaggcatgtaaagctgctatatttcttt |
33143130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 33139294 - 33139421
Alignment:
| Q |
30 |
tctaatttcaaaacctaaaagttcatctgcaatttcagctttatcttctgcatgtgcatcttcttctaccaatgcaacaattaacactaggtactttctg |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||| |||| |||||||||||| | |||| |||||||||||| || |
|
|
| T |
33139294 |
tctaatttcactacctaaaagttcatctgtaatttcagcttcatcttcagcatgtgcctctt---ctaccaatgcaagagttaatactaggtactttttg |
33139390 |
T |
|
| Q |
130 |
aatgaagttcatagaacactctcaagtttga |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33139391 |
aatgaagttcatagaacactctcaagtttga |
33139421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 33139435 - 33139467
Alignment:
| Q |
156 |
tttgaggcatgtaaagctgctatatttcttttt |
188 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
33139435 |
tttgaggcatataaagctgctatatttcttttt |
33139467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 32342853 - 32342784
Alignment:
| Q |
91 |
tcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttga |
160 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
32342853 |
tcttctaccaatgcaactgttaacaccagggacttcctgaaggaagttcatagaacactctcaagtttga |
32342784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 32349976 - 32349907
Alignment:
| Q |
91 |
tcttctaccaatgcaacaattaacactaggtactttctgaatgaagttcatagaacactctcaagtttga |
160 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
32349976 |
tcttctaccaatgcagttgttaattctaggtacttcctgaaggaagttcatagaacactctcaagtttga |
32349907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 977 times since January 2019
Visitors: 4362