View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0692-Insertion-9 (Length: 176)
Name: NF0692-Insertion-9
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 5e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 14021600 - 14021457
Alignment:
| Q |
8 |
gaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaa |
107 |
Q |
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| T |
14021600 |
gaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaa |
14021501 |
T |
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| Q |
108 |
acatgatgaaggtttggttcaagaattctgtaatgaaagtggtg |
151 |
Q |
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| T |
14021500 |
acatgatgaaggtttggttcaagaattctgtaatgaaagtggtg |
14021457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 46300827 - 46300744
Alignment:
| Q |
37 |
acaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggt |
120 |
Q |
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| T |
46300827 |
acaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggt |
46300744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 56378749 - 56378802
Alignment:
| Q |
34 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
87 |
Q |
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| T |
56378749 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
56378802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 3683678 - 3683646
Alignment:
| Q |
37 |
acaaaattcacgcaggaacagaaggataagatg |
69 |
Q |
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| T |
3683678 |
acaaaattcacgcaggaacagaaggaaaagatg |
3683646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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