View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0692_low_17 (Length: 204)

Name: NF0692_low_17
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0692_low_17
NF0692_low_17
[»] chr7 (9 HSPs)
chr7 (18-126)||(38099163-38099271)
chr7 (40-110)||(48716585-48716655)
chr7 (37-109)||(38098555-38098627)
chr7 (63-120)||(25758634-25758693)
chr7 (78-126)||(47171392-47171440)
chr7 (88-126)||(9269934-9269972)
chr7 (97-126)||(40496407-40496436)
chr7 (98-126)||(10234010-10234038)
chr7 (66-106)||(40273598-40273638)
[»] chr3 (6 HSPs)
chr3 (64-123)||(46889498-46889557)
chr3 (89-126)||(33291840-33291877)
chr3 (66-126)||(52696051-52696112)
chr3 (66-123)||(19227483-19227540)
chr3 (66-106)||(13477752-13477792)
chr3 (66-106)||(45393078-45393118)
[»] chr2 (11 HSPs)
chr2 (61-126)||(42651266-42651331)
chr2 (78-126)||(12001098-12001146)
chr2 (66-121)||(44791511-44791566)
chr2 (64-126)||(19405346-19405408)
chr2 (61-126)||(19424154-19424219)
chr2 (60-121)||(35166045-35166106)
chr2 (61-125)||(41564825-41564889)
chr2 (64-121)||(42650595-42650652)
chr2 (78-126)||(3666877-3666925)
chr2 (51-102)||(38247808-38247859)
chr2 (87-126)||(38248927-38248966)
[»] chr1 (11 HSPs)
chr1 (36-109)||(31571763-31571836)
chr1 (74-126)||(1478537-1478589)
chr1 (91-126)||(1159091-1159126)
chr1 (74-123)||(35596958-35597007)
chr1 (64-97)||(35996827-35996860)
chr1 (78-126)||(1477973-1478021)
chr1 (64-118)||(38163065-38163119)
chr1 (88-124)||(23733421-23733457)
chr1 (68-112)||(25447046-25447090)
chr1 (90-126)||(34082899-34082935)
chr1 (78-126)||(35597524-35597572)
[»] chr4 (7 HSPs)
chr4 (74-113)||(36488133-36488172)
chr4 (91-126)||(52408294-52408329)
chr4 (91-126)||(52413629-52413664)
chr4 (68-121)||(13922538-13922591)
chr4 (90-123)||(49442895-49442928)
chr4 (74-126)||(51707493-51707545)
chr4 (88-124)||(51708189-51708225)
[»] chr8 (3 HSPs)
chr8 (74-123)||(3029243-3029292)
chr8 (91-123)||(13950178-13950210)
chr8 (66-126)||(44621625-44621685)
[»] scaffold0434 (1 HSPs)
scaffold0434 (88-124)||(12892-12928)
[»] chr5 (2 HSPs)
chr5 (64-124)||(32716207-32716267)
chr5 (87-126)||(16133582-16133621)
[»] scaffold1862 (1 HSPs)
scaffold1862 (91-126)||(39-74)
[»] chr6 (3 HSPs)
chr6 (64-123)||(10092418-10092477)
chr6 (91-126)||(13252833-13252868)
chr6 (68-126)||(15882168-15882226)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 38099163 - 38099271
Alignment:
Q  18 ataatcgtgtgcgcagtgctattgatttgtttcttaaattaaattgtgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttga 117  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38099163 ataatcgtgtgcgcagttctattaatttgtttcttaaattaaattgtgaaccattagattaattagatataatggttgagatttggtgcaagtcttttga 38099262  T
Q  118 cttacacct 126  Q
    |||||||||    
T  38099263 cttacacct 38099271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 48716655 - 48716585
Alignment:
Q  40 tgatttgtttcttaaattaaattgtgaaccattagattaattagatctaatggttgagatttggtgtaagt 110  Q
    |||||||||| ||||| |||||| ||| ||||| |||| ||||||| |||||||||||||||| |||||||    
T  48716655 tgatttgttttttaaaataaattatgagccattcgattgattagatttaatggttgagatttgatgtaagt 48716585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 38098627 - 38098555
Alignment:
Q  37 tattgatttgtttcttaaattaaattgtgaaccattagattaattagatctaatggttgagatttggtgtaag 109  Q
    ||||||||||||| ||||| ||| |||||| ||||| |||| |||| ||||||||||||| ||||||| ||||    
T  38098627 tattgatttgttttttaaaataagttgtgagccattcgattgattaaatctaatggttgatatttggtttaag 38098555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 25758693 - 25758634
Alignment:
Q  63 gtgaaccattagattaattagatctaatggttgagatttg--gtgtaagtcttttgactt 120  Q
    |||||||||| |||||||| ||| ||||||||||||||||  ||||||||||||| ||||    
T  25758693 gtgaaccattggattaatttgatttaatggttgagatttggtgtgtaagtcttttaactt 25758634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 47171392 - 47171440
Alignment:
Q  78 aattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||| || ||| |||| |||||||||||||||||||||||||||||||    
T  47171392 aattaaatttaacggttaagatttggtgtaagtcttttgacttacacct 47171440  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 9269934 - 9269972
Alignment:
Q  88 aatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  9269934 aatggttgatatttgttgtaagtcttttgacttacacct 9269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 126
Target Start/End: Original strand, 40496407 - 40496436
Alignment:
Q  97 gatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||||||||||||||||||||||||    
T  40496407 gatttggtgtaagtcttttgacttacacct 40496436  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 10234010 - 10234038
Alignment:
Q  98 atttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||||||||    
T  10234010 atttggtgtaagtcttttgacttacacct 10234038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 40273638 - 40273598
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgt 106  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  40273638 aaccattagattaattagattgaacggttgagatttggtgt 40273598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 46889557 - 46889498
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttaca 123  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  46889557 tgaaccattagattaattagatctaatggttgagattttgtgtaagtctttcgacttaca 46889498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 33291877 - 33291840
Alignment:
Q  89 atggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33291877 atggttgagatttggtgtaagttttttgacttacacct 33291840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 52696051 - 52696112
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgtaag-tcttttgacttacacct 126  Q
    ||||||| ||||||||  || ||||||||||||||||||||||| | |||||||||||||||    
T  52696051 aaccattggattaattgaatttaatggttgagatttggtgtaagtttttttgacttacacct 52696112  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 19227540 - 19227483
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttaca 123  Q
    ||||||||||||  ||||||   |||| || |||||||||||||||||||||||||||    
T  19227540 aaccattagattgtttagattggatggctgggatttggtgtaagtcttttgacttaca 19227483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 13477752 - 13477792
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgt 106  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  13477752 aaccattagattaattagattgaacggttgagatttggtgt 13477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 45393118 - 45393078
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgt 106  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  45393118 aaccattagattaattagattgaacggttgagatttggtgt 45393078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 42651266 - 42651331
Alignment:
Q  61 ttgtgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||| |||||  ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42651266 ttgtgagccattgaattaatttgatttaatggttgagatttggtgtaagtcttttgacttacacct 42651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 12001146 - 12001098
Alignment:
Q  78 aattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  12001146 aatttgatttaatggttgagatttggtgtaagtcttttgacttacacct 12001098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 44791511 - 44791566
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgtaagtcttttgactta 121  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  44791511 aaccattggattaattagatttaatggttgagattttgtgtaagtcttctgactta 44791566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 19405408 - 19405346
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||| |||||||| ||| |||||||| | |||||||||||||||||| ||||||||||    
T  19405408 tgaaccattggattaatttgatttaatggttaaaatttggtgtaagtcttttaacttacacct 19405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 19424154 - 19424219
Alignment:
Q  61 ttgtgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||| |||||||| ||| |||||||||| |||||||| ||| |||||| |||||||||    
T  19424154 ttgtgaaccatttgattaatttgatttaatggttgaaatttggtgaaagccttttggcttacacct 19424219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 35166106 - 35166045
Alignment:
Q  60 attgtgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgactta 121  Q
    ||||| ||||||| ||||||||| || ||||||||||||||| ||||||||||| |||||||    
T  35166106 attgtaaaccattggattaattaaatttaatggttgagattttgtgtaagtcttctgactta 35166045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 41564889 - 41564825
Alignment:
Q  61 ttgtgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacc 125  Q
    ||||||||||||  ||| ||| ||| |||||||| |||||||||||||||||||| |||||||||    
T  41564889 ttgtgaaccattgaattgatttgatttaatggttaagatttggtgtaagtcttttaacttacacc 41564825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 42650652 - 42650595
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgactta 121  Q
    ||||||||| |||||||| ||| |||||||| ||||||| | ||||||||||||||||    
T  42650652 tgaaccatttgattaatttgatttaatggttaagatttgatataagtcttttgactta 42650595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3666925 - 3666877
Alignment:
Q  78 aattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||| || ||| |||| |||||||||||||||||||||||||||||||    
T  3666925 aattaaatttaacggttaagatttggtgtaagtcttttgacttacacct 3666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 38247859 - 38247808
Alignment:
Q  51 ttaaattaaattgtgaaccattagattaattagatctaatggttgagatttg 102  Q
    |||||||||||| |||  |||| |||| ||||||||||||||||||||||||    
T  38247859 ttaaattaaattatgagtcattcgattgattagatctaatggttgagatttg 38247808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 38248927 - 38248966
Alignment:
Q  87 taatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  38248927 taatggttgagatttggtgtaagtcattagacttacacct 38248966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 31571763 - 31571836
Alignment:
Q  36 ctattgatttgtttcttaaattaaattgtgaaccattagattaattagatctaatggttgagatttggtgtaag 109  Q
    |||||| ||||||| | |||||||||||||| |||||| ||| ||| |||||||||||||| ||||||||||||    
T  31571763 ctattggtttgtttttgaaattaaattgtgagccattatattgattggatctaatggttgaaatttggtgtaag 31571836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 1478537 - 1478589
Alignment:
Q  74 gattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||| ||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  1478537 gatttattagttttaacggttgagatttggtgtaagtcttttgacttacacct 1478589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 1159126 - 1159091
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||||||||||||||||||||||||||||||    
T  1159126 ggttgagatttggtgtaagtcttttgacttacacct 1159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 35597007 - 35596958
Alignment:
Q  74 gattaattagatctaatggttgagatttggtgtaagtcttttgacttaca 123  Q
    |||| ||||| | ||| |||||||||||||||||||||||||||||||||    
T  35597007 gatttattagttttaacggttgagatttggtgtaagtcttttgacttaca 35596958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 35996827 - 35996860
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgag 97  Q
    ||||||||||||||||||||||||||||||||||    
T  35996827 tgaaccattagattaattagatctaatggttgag 35996860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 1478021 - 1477973
Alignment:
Q  78 aattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||| || ||| |||| |||||||||||||||||||||||||||||||    
T  1478021 aattaaatttaacggttaagatttggtgtaagtcttttgacttacacct 1477973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 38163065 - 38163119
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgac 118  Q
    ||||||||| ||||||||| || |||||||| | ||||||||| |||||||||||    
T  38163065 tgaaccatttgattaattaaatttaatggttaaaatttggtgtcagtcttttgac 38163119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 23733457 - 23733421
Alignment:
Q  88 aatggttgagatttggtgtaagtcttttgacttacac 124  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  23733457 aatggatgagatttggtgtaaatcttttgacttacac 23733421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 25447046 - 25447090
Alignment:
Q  68 ccattagattaattagatctaatggttgagatttggtgtaagtct 112  Q
    ||||||||||||||  || || |||||||||||||||||||||||    
T  25447046 ccattagattaatttaatttagtggttgagatttggtgtaagtct 25447090  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 34082899 - 34082935
Alignment:
Q  90 tggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34082899 tggttgagatttggtgtaagtctaatgacttacacct 34082935  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 35597524 - 35597572
Alignment:
Q  78 aattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||| || ||| |||| ||||||||||||| |||||||||||||||||    
T  35597524 aattaaatttaacggttaagatttggtgtaaatcttttgacttacacct 35597572  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 36488133 - 36488172
Alignment:
Q  74 gattaattagatctaatggttgagatttggtgtaagtctt 113  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  36488133 gattaattagatttaatggttgagatttggtgtaagtctt 36488172  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 52408329 - 52408294
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||| |||||||||||    
T  52408329 ggttgagatttggtgtaagtctttggacttacacct 52408294  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 52413629 - 52413664
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||| |||||||||||    
T  52413629 ggttgagatttggtgtaagtctttggacttacacct 52413664  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 13922538 - 13922591
Alignment:
Q  68 ccattagattaattagatctaatggttgagatttggtgtaagtcttttgactta 121  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| || ||||||    
T  13922538 ccattagattaatttaaattaatggttgagatttggtgtaagtcattagactta 13922591  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 49442895 - 49442928
Alignment:
Q  90 tggttgagatttggtgtaagtcttttgacttaca 123  Q
    |||||||||||||||||||||| |||||||||||    
T  49442895 tggttgagatttggtgtaagtcatttgacttaca 49442928  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 51707545 - 51707493
Alignment:
Q  74 gattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||| ||||| ||| |||| ||||||||||||| ||||| |||||||||||    
T  51707545 gattaaatagatataacggttcagatttggtgtaaatctttagacttacacct 51707493  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 51708189 - 51708225
Alignment:
Q  88 aatggttgagatttggtgtaagtcttttgacttacac 124  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  51708189 aatggatgagatttgatgtaagtcttttgacttacac 51708225  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 3029243 - 3029292
Alignment:
Q  74 gattaattagatctaatggttgagatttggtgtaagtcttttgacttaca 123  Q
    |||| ||||| | ||| |||||||||||||||||||||||||||||||||    
T  3029243 gatttattagttttaacggttgagatttggtgtaagtcttttgacttaca 3029292  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 13950178 - 13950210
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttaca 123  Q
    |||||||||||||| ||||||||||||||||||    
T  13950178 ggttgagatttggtataagtcttttgacttaca 13950210  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 44621685 - 44621625
Alignment:
Q  66 aaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||| |||||  |||||||  ||||||||| ||| |||| |||||||||||    
T  44621685 aaccattagattaaatagattgaatggttaggatttggtgcaagcctttagacttacacct 44621625  T

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Target: scaffold0434 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 12928 - 12892
Alignment:
Q  88 aatggttgagatttggtgtaagtcttttgacttacac 124  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12928 aatggttgagatttggtgtaagtcttttaacttacac 12892  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 32716267 - 32716207
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacac 124  Q
    ||||||||| |||| ||||||| ||||| |||||||||||||||| | |||| ||||||||    
T  32716267 tgaaccattggattgattagatttaatgtttgagatttggtgtaaatgttttaacttacac 32716207  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 16133621 - 16133582
Alignment:
Q  87 taatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  16133621 taatggttgagatttggtgtaagtctttacacttacacct 16133582  T

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Target: scaffold1862 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 39 - 74
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||| |||||||||||    
T  39 ggttgagatttggtgtaagtctttggacttacacct 74  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 10092418 - 10092477
Alignment:
Q  64 tgaaccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttaca 123  Q
    ||||| ||| |||||| || || ||||||||||||||| ||||||||||| |||||||||    
T  10092418 tgaactattcgattaactaaatttaatggttgagatttagtgtaagtcttatgacttaca 10092477  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 13252833 - 13252868
Alignment:
Q  91 ggttgagatttggtgtaagtcttttgacttacacct 126  Q
    |||||||||||||||||||||||| |||||||||||    
T  13252833 ggttgagatttggtgtaagtctttggacttacacct 13252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 15882226 - 15882168
Alignment:
Q  68 ccattagattaattagatctaatggttgagatttggtgtaagtcttttgacttacacct 126  Q
    ||||||||||||||  |  ||||||||||||||||||||| ||| || |||||||||||    
T  15882226 ccattagattaatttaaattaatggttgagatttggtgtatgtcattagacttacacct 15882168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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